hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00445827/chunk_1/iprscan-20080502-00445827.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0358 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02141.11.ls DENN (AEX-3) domain 386.4 4.1e-113 1 PF02141.11.fs DENN (AEX-3) domain 384.5 1.5e-112 1 PF03456.8.ls uDENN domain 155.5 1.3e-43 1 PF03456.8.fs uDENN domain 153.6 4.8e-43 1 PF03455.9.ls dDENN domain 107.8 2.9e-29 1 PF03455.9.fs dDENN domain 105.9 4e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03456.8.fs 1/1 11 101 .. 1 108 [] 153.6 4.8e-43 PF03456.8.ls 1/1 11 101 .. 1 108 [] 155.5 1.3e-43 PF02141.11.ls 1/1 175 405 .. 1 231 [] 386.4 4.1e-113 PF02141.11.fs 1/1 175 405 .. 1 231 [] 384.5 1.5e-112 PF03455.9.fs 1/1 488 561 .. 1 81 [] 105.9 4e-29 PF03455.9.ls 1/1 488 561 .. 1 81 [] 107.8 2.9e-29 Alignments of top-scoring domains: PF03456.8.fs: domain 1 of 1, from 11 to 101: score 153.6, E = 4.8e-43 *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy c+rL Dy+V+Vg+++++ +++ +++Pellr++P KIAA0358 11 CPRLLDYLVIVGARHPS--------SDSVAQTPELLRRYP------- 42 kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk edh+++p+ + ++++FC+Peg+ sv++r++ +lrd+++F+F+LTd+D++ KIAA0358 43 LEDHTEFPL-PPDVVFFCQPEGCLSVRQRRM-SLRDDTSFVFTLTDKDTG 90 RtryGfCltfy<-* tryG+C++fy KIAA0358 91 VTRYGICVNFY 101 PF03456.8.ls: domain 1 of 1, from 11 to 101: score 155.5, E = 1.3e-43 *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy c+rL Dy+V+Vg+++++ +++ +++Pellr++P KIAA0358 11 CPRLLDYLVIVGARHPS--------SDSVAQTPELLRRYP------- 42 kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk edh+++p+ + ++++FC+Peg+ sv++r++ +lrd+++F+F+LTd+D++ KIAA0358 43 LEDHTEFPL-PPDVVFFCQPEGCLSVRQRRM-SLRDDTSFVFTLTDKDTG 90 RtryGfCltfy<-* tryG+C++fy KIAA0358 91 VTRYGICVNFY 101 PF02141.11.ls: domain 1 of 1, from 175 to 405: score 386.4, E = 4.1e-113 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk +++s+C++S++pff++Fr++L++lkr++d++++++l ++ g+++g+ KIAA0358 175 STLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGV 221 srdtvwrvltgvl.......evLhdirElEslirnLlyevplPapGktir +rdt+wr++tg+l +++++++Lhd+rE+E++i++Ll++ p+P++G++ r KIAA0358 222 QRDTMWRIFTGSLlveekssALLHDLREIEAWIYRLLRS-PVPVSGQK-R 269 vkvfvlgagvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlq v+++vl++++ + +++f+lpdp++++l+df+l++++e+LGv+ +lq KIAA0358 270 VDIEVLPQEL-----QPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQ 314 LfaaaLlErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLl +++++LlE+k++++S+++++Ls++++A+va++YPle+++p+IP+LP++++ KIAA0358 315 VLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMA 364 sAEdvLcAPtPFlIGVhssffelvkdlpleidvvvVDLDtn<-* sAE++L+APtP++IGV++sff ++ d+++++dv++VDLD+n KIAA0358 365 SAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSN 405 PF02141.11.fs: domain 1 of 1, from 175 to 405: score 384.5, E = 1.5e-112 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk +++s+C++S++pff++Fr++L++lkr++d++++++l ++ g+++g+ KIAA0358 175 STLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGV 221 srdtvwrvltgvl.......evLhdirElEslirnLlyevplPapGktir +rdt+wr++tg+l +++++++Lhd+rE+E++i++Ll++ p+P++G++ r KIAA0358 222 QRDTMWRIFTGSLlveekssALLHDLREIEAWIYRLLRS-PVPVSGQK-R 269 vkvfvlgagvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlq v+++vl++++ + +++f+lpdp++++l+df+l++++e+LGv+ +lq KIAA0358 270 VDIEVLPQEL-----QPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQ 314 LfaaaLlErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLl +++++LlE+k++++S+++++Ls++++A+va++YPle+++p+IP+LP++++ KIAA0358 315 VLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMA 364 sAEdvLcAPtPFlIGVhssffelvkdlpleidvvvVDLDtn<-* sAE++L+APtP++IGV++sff ++ d+++++dv++VDLD+n KIAA0358 365 SAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSN 405 PF03455.9.fs: domain 1 of 1, from 488 to 561: score 105.9, E = 4e-29 *->lddqvreaFLrfFN.asllggYrnfLryprkapewegardevvtFqk +d+++r+a++rfFN+a++l+g+++++r++r++p+ +vv+Fq KIAA0358 488 VDVATRVAMVRFFNsANVLQGFQMHTRTLRLFPR------PVVAFQA 528 eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-* ++FL+srpr++ F+++l++tQAVe+F e+I+++ KIAA0358 529 GSFLASRPRQTP--FAEKLARTQAVEYFGEWILNP 561 PF03455.9.ls: domain 1 of 1, from 488 to 561: score 107.8, E = 2.9e-29 *->lddqvreaFLrfFN.asllggYrnfLryprkapewegardevvtFqk +d+++r+a++rfFN+a++l+g+++++r++r++p+ +vv+Fq KIAA0358 488 VDVATRVAMVRFFNsANVLQGFQMHTRTLRLFPR------PVVAFQA 528 eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-* ++FL+srpr++ F+++l++tQAVe+F e+I+++ KIAA0358 529 GSFLASRPRQTP--FAEKLARTQAVEYFGEWILNP 561 //