hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00374353/chunk_1/iprscan-20080502-00374353.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0354 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00651.21.ls BTB/POZ domain 140.0 5.8e-39 1 PF00651.21.fs BTB/POZ domain 138.3 2e-38 1 PF00096.16.ls Zinc finger, C2H2 type 40.2 6.7e-09 2 PF00096.16.fs Zinc finger, C2H2 type 36.2 8.9e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 67 176 .. 1 135 [] 138.3 2e-38 PF00651.21.ls 1/1 67 176 .. 1 135 [] 140.0 5.8e-39 PF00096.16.fs 2/2 694 717 .. 1 24 [] 25.8 3.6e-05 PF00096.16.ls 2/2 694 717 .. 1 24 [] 27.7 3.7e-05 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 67 to 176: score 138.3, E = 2e-38 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln +r++g+lcD+++vvg +++fkAH+ vLaacS+ F+al KIAA0354 67 LNYQRLHGQLCDCVIVVG--------NRHFKAHRSVLAACSTHFRAL 105 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+ ++ ++++ +++ e v++e+f al++ +Yt++l++ KIAA0354 106 FSVAEG----DQTMNMI-QLDSEVVTAEAFAALIDMMYTSTLMLG----- 145 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+nv+d+L aA ++l++ s+v+aC ++l + + KIAA0354 146 ------ESNVMDVLLAA-SHLHLNSVVKACKHYLTTRT 176 PF00651.21.ls: domain 1 of 1, from 67 to 176: score 140.0, E = 5.8e-39 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ln +r++g+lcD+++vvg +++fkAH+ vLaacS+ F+al KIAA0354 67 LNYQRLHGQLCDCVIVVG--------NRHFKAHRSVLAACSTHFRAL 105 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+ ++ ++++ +++ e v++e+f al++ +Yt++l++ KIAA0354 106 FSVAEG----DQTMNMI-QLDSEVVTAEAFAALIDMMYTSTLMLG----- 145 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+nv+d+L aA ++l++ s+v+aC ++l + + KIAA0354 146 ------ESNVMDVLLAA-SHLHLNSVVKACKHYLTTRT 176 PF00096.16.fs: domain 2 of 2, from 694 to 717: score 25.8, E = 3.6e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C +Cgk+Fs++s+L +H +t++ KIAA0354 694 YACL-KCGKRFSQSSHLYKHSKTtC 717 PF00096.16.ls: domain 2 of 2, from 694 to 717: score 27.7, E = 3.7e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C +Cgk+Fs++s+L +H +t++ KIAA0354 694 YACL-KCGKRFSQSSHLYKHSKTtC 717 //