hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00360619/chunk_1/iprscan-20080502-00360619.nocrc
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Query sequence: KIAA0353
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00038.11.ls Intermediate filament protein                  -10.8      9e-09   1
PF00038.11.fs Intermediate filament protein                   30.5    9.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00038.11.ls   1/1      59   370 ..     1   355 []   -10.8    9e-09
PF00038.11.fs   1/1     300   370 ..   285   355 .]    30.5  9.9e-08

Alignments of top-scoring domains:
PF00038.11.ls: domain 1 of 1, from 59 to 370: score -10.8, E = 9e-09
                   *->nEKeemQnLNDRLASYIDKVRfLEqqNkeLeakieelrqktksaeps
                       EK+e+Q+LN RL  Y  +VR LE +N +Le +++ +r++   +  +
    KIAA0353    59    PEKAELQELNARLYDYVCRVRELERENLLLEEELRGRRGR--EGLWA 103  

                   rlyslYeqeireLRrqldeltnerarlqleidnlrlaaedfrkKyEdEen
                        + +e r LR+qldel+   a  + e+d lr ++ +++    +E  
    KIAA0353   104 EGQARCAEEARSLRQQLDELSWATALAEGERDALRRELRELQRLDAEE-- 151  

                   DLaAqgrLkdLeallnskEAeLatalnlRqeaEndingLRaQiAlEslaA
                                            ++ R  + +++ ++           
    KIAA0353   152 -------------------------RAARGRLDAELGAQQ---------- 166  

                   kkdlDeatLarvDLErkiESLqEElaFLKknHEEElreLqaqvqdgqvnV
                    ++l+ea  ar  LE+ +  Lq E   L   HE  +reL+a+    + ++
    KIAA0353   167 -RELQEALGARAALEALLGRLQAERRGLDAAHERDVRELRARA--ASLTM 213  

                   EmDa.arkpDfEKLtka....LaEiRaQYEelAekNrqeaEewYksKlee
                      a+a +p       a++++L+E+   Y  l++ + +e+ ++Y+  + e
    KIAA0353   214 HFRArATGPA------AppprLREVHDSYALLVAESWRETVQLYEDEVRE 257  

                   LqqaaarngealrsaKeEitElRRqiQsLeiELqslkkqkesLErqlaEl
                   L +a  r  e   +a+eE        ++L+ E  +l   ++ LE++l  +
    KIAA0353   258 LEEALRRGQESRLQAEEETRLCAQEAEALRREALGLEQLRARLEDALLRM 307  

                   EeryeaelaqyQdtiseLEeeLqqlkeeMaRQLrEYQeLLdVKlALDiEI
                    e+y+ +++  Q+ i  LE+e + l   Ma  Lr+YQ+LL VK+ L  E 
    KIAA0353   308 REEYGIQAEERQRAIDCLEDEKATLTLAMADWLRDYQDLLQVKTGLSLEV 357  

                   ATYRKLLEGEEsR<-*
                   ATYR LLEGE +    
    KIAA0353   358 ATYRALLEGESNP    370  

PF00038.11.fs: domain 1 of 1, from 300 to 370: score 30.5, E = 9.9e-08
                   *->LErqlaElEeryeaelaqyQdtiseLEeeLqqlkeeMaRQLrEYQeL
                      LE++l  + e+y+ +++  Q+ i  LE+e + l   Ma  Lr+YQ+L
    KIAA0353   300    LEDALLRMREEYGIQAEERQRAIDCLEDEKATLTLAMADWLRDYQDL 346  

                   LdVKlALDiEIATYRKLLEGEEsR<-*
                   L VK+ L  E ATYR LLEGE +    
    KIAA0353   347 LQVKTGLSLEVATYRALLEGESNP    370  

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