hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00342911/chunk_1/iprscan-20080502-00342911.nocrc
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Query sequence: KIAA0352
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 149.2    4.1e-40   9
SM00225                                                  92.5      5e-23   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      39   135 ..     1   114 []    92.5    5e-23
SM00355      1/9     381   403 ..     1    23 []    14.4      7.4
SM00355      2/9     409   429 ..     1    23 []     8.2       38
SM00355      3/9     460   483 ..     1    23 []     2.2  1.8e+02
SM00355      4/9     489   511 ..     1    23 []    10.0       23
SM00355      5/9     517   539 ..     1    23 []    24.3    0.017
SM00355      6/9     547   569 ..     1    23 []    23.5    0.029
SM00355      7/9     614   636 ..     1    23 []    26.8    0.003
SM00355      8/9     642   664 ..     1    23 []    19.6     0.43
SM00355      9/9     670   692 ..     1    23 []    20.2      0.3

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 39 to 135: score 92.5, E = 5e-23
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt+vvg          ++f+a  HkavLa+     +yF++lf+++
    KIAA0352    39    CDVTIVVGS---------RSFPA--HKAVLACA---AGYFQNLFLNt 71   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   + +  +++ +d+      ++p  F+ +L+f Yt++l+ +     nv  + 
    KIAA0352    72 gldaartYVVDF------ITPANFEKVLSFVYTsELFTDLI---NVGVIY 112  

                   elAdfldSYGqip.lvelCeefllknl<-*
                   e A++l    ++++l ++C++   + +   
    KIAA0352   113 EVAERL----GMEdLLQACHSTFPDLE    135  

SM00355: domain 1 of 9, from 381 to 403: score 14.4, E = 7.4
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ C  +f ++++ + H+ +H   
    KIAA0352   381    GNCKV-CETHFQDRnSRVTHVLSH    403  

SM00355: domain 2 of 9, from 409 to 429: score 8.2, E = 38
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C  +f ++ +L+ H r     
    KIAA0352   409    FSCDM-CETKFFTQwQLTLHRR--    429  

SM00355: domain 3 of 9, from 460 to 483: score 2.2, E = 1.8e+02
                   *->ykCpigCg.ksfssk.aLkrHmrvH<-*
                      +kC   Cg+   ++ +  + H+  H   
    KIAA0352   460    LKCAA-CGkVLAKDFhVVRGHILDH    483  

SM00355: domain 4 of 9, from 489 to 511: score 10.0, E = 23
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ C+++  +  +L  H  +H   
    KIAA0352   489    QACSV-CDQRHLNLcSLMWHTLSH    511  

SM00355: domain 5 of 9, from 517 to 539: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C  sf +++ L++Hm vH   
    KIAA0352   517    FSCSV-CANSFVDWhLLEKHMAVH    539  

SM00355: domain 6 of 9, from 547 to 569: score 23.5, E = 0.029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C++sf+s+ a++ H+ +H   
    KIAA0352   547    FHCRL-CSQSFKSEaAYRYHVSQH    569  

SM00355: domain 7 of 9, from 614 to 636: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f + ++++ H r+H   
    KIAA0352   614    YSCKV-CGKRFAHTsEFNYHRRIH    636  

SM00355: domain 8 of 9, from 642 to 664: score 19.6, E = 0.43
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f+ ++  k H+++H   
    KIAA0352   642    YQCKV-CHKFFRGRsTIKCHLKTH    664  

SM00355: domain 9 of 9, from 670 to 692: score 20.2, E = 0.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg   s+ + + +H+ vH   
    KIAA0352   670    YRCTV-CGHYSSTLnLMSKHVGVH    692  

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