hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00342911/chunk_1/iprscan-20080502-00342911.nocrc
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Query sequence: KIAA0352
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         125.8    1.1e-34   9
PF00096.16.fs Zinc finger, C2H2 type                         117.2    4.4e-32   8
PF00651.21.ls BTB/POZ domain                                 112.6    1.1e-30   1
PF00651.21.fs BTB/POZ domain                                 110.8      2e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      29   135 ..     1   135 []   110.8    2e-30
PF00651.21.ls   1/1      29   135 ..     1   135 []   112.6  1.1e-30
PF00096.16.ls   5/9     517   539 ..     1    24 []    25.6  0.00016
PF00096.16.fs   4/8     517   539 ..     1    24 []    23.7  0.00012
PF00096.16.fs   6/8     614   636 ..     1    24 []    27.6  1.3e-05
PF00096.16.ls   7/9     614   636 ..     1    24 []    29.5  1.1e-05
PF00096.16.ls   8/9     642   664 ..     1    24 []    21.7   0.0024

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 29 to 135: score 110.8, E = 2e-30
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln+ r+++ +cDVt+vvg         ++f+AHKavLa++  YF++l
    KIAA0352    29    LNKCRLSETMCDVTIVVG--------SRSFPAHKAVLACAAGYFQNL 67   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F++++      + +    ++  ++++p  fe +L+f Yt+el+ +     
    KIAA0352    68 FLNTG-----LDAAR---TYVVDFITPANFEKVLSFVYTSELFTD----- 104  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         + nv  + + A ++l +++l +aC++ +       
    KIAA0352   105 ------LINVGVIYEVA-ERLGMEDLLQACHSTFPDLE    135  

PF00651.21.ls: domain 1 of 1, from 29 to 135: score 112.6, E = 1.1e-30
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln+ r+++ +cDVt+vvg         ++f+AHKavLa++  YF++l
    KIAA0352    29    LNKCRLSETMCDVTIVVG--------SRSFPAHKAVLACAAGYFQNL 67   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F++++      + +    ++  ++++p  fe +L+f Yt+el+ +     
    KIAA0352    68 FLNTG-----LDAAR---TYVVDFITPANFEKVLSFVYTSELFTD----- 104  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         + nv  + + A ++l +++l +aC++ +       
    KIAA0352   105 ------LINVGVIYEVA-ERLGMEDLLQACHSTFPDLE    135  

PF00096.16.ls: domain 5 of 9, from 517 to 539: score 25.6, E = 0.00016
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C  sF +++ L++H+ +H   
    KIAA0352   517    FSCS-VCANSFVDWHLLEKHMAVH    539  

PF00096.16.fs: domain 4 of 8, from 517 to 539: score 23.7, E = 0.00012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C  sF +++ L++H+ +H   
    KIAA0352   517    FSCS-VCANSFVDWHLLEKHMAVH    539  

PF00096.16.fs: domain 6 of 8, from 614 to 636: score 27.6, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F + s+++ H+r+H   
    KIAA0352   614    YSCK-VCGKRFAHTSEFNYHRRIH    636  

PF00096.16.ls: domain 7 of 9, from 614 to 636: score 29.5, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F + s+++ H+r+H   
    KIAA0352   614    YSCK-VCGKRFAHTSEFNYHRRIH    636  

PF00096.16.ls: domain 8 of 9, from 642 to 664: score 21.7, E = 0.0024
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k F+ +s+ k Hl+tH   
    KIAA0352   642    YQCK-VCHKFFRGRSTIKCHLKTH    664  

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