hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00325229/chunk_1/iprscan-20080502-00325229.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0351 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00147 364.3 7.8e-105 1 SM00233 60.4 2.2e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00147 1/1 79 323 .. 1 261 [] 364.3 7.8e-105 SM00233 1/1 465 578 .. 1 82 [] 60.4 2.2e-13 Alignments of top-scoring domains: SM00147: domain 1 of 1, from 79 to 323: score 364.3, E = 7.8e-105 *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap +l++ pee+A Q+Tl+d +F++I+p+El ++ w+k++k+s++p KIAA0351 79 VLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAP--- 122 qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn n+ af++rfN+vs+wV+ eIl+++t +k Rae+ls+F+k+Ak+++eLn KIAA0351 123 -NVVAFTRRFNQVSFWVVREILTAQT--LKIRAEILSHFVKIAKKLLELN 169 NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk N++Slm++vsaL+s+pI RL+kTW+ l++k+k++fe+L++l++ + +N+k KIAA0351 170 NLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKE-DNYK 218 nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN + Re+++s++ ++p +P+lG+yL DL++id ++p ++N KIAA0351 219 RTREYIRSLK-----MVPSIPYLGIYLLDLIYIDSAYPASGS----IMEN 259 FeKrrkiakilreirqlqsacqpynlkpnrndiqellrasrplevlpeee + +++ +ilr i lq++c++++l+ +++q++l+++r++e l+++ KIAA0351 260 EQRSNQMNNILRIIADLQVSCSYDHLTTL-PHVQKYLKSVRYIEELQKFV 308 .delyelSlriEPrv<-* +d+ y+lSlriEP + KIAA0351 309 eDDNYKLSLRIEPGS 323 SM00233: domain 1 of 1, from 465 to 578: score 60.4, E = 2.2e-13 *->vikeGwLlkks.........k.swkkryfvLfngvLlyyksk..... +++eG L++k+ + ++++ ++sw++++++L +++Llyy k+ +++ KIAA0351 465 PTMEGPLRRKTllkegrkpaLsSWTRYWVILSGSTLLYYGAKslrgt 511 .......kpkgsipLsgcsvre.p......cFeivt.dr..tlllqAese ++++ +++p +++++ g v+ ++++++++ F++ ++d+++++ +q+ s KIAA0351 512 drkhyksTPGKKVSIVGWMVQLpDdpehpdIFQLNNpDKgnVYKFQTGSR 561 eereeWvealqsaiaka<-* ++ W ++l +a++++ KIAA0351 562 FHAILWHKHLDDACKSN 578 //