hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23554449/chunk_1/iprscan-20080501-23554449.nocrc
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Query sequence: KIAA0329
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00706                                                 293.6    1.4e-83  10
SM00320                                                  31.4    0.00013   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/3      27    67 ..     1    46 []     3.6  1.3e+02
SM00320    2/3      71   111 ..     1    46 []     7.0       39
SM00320    3/3     119   161 ..     1    46 []    20.8     0.19
SM00706    1/10    286   320 ..     1    43 []    15.2      3.1
SM00706    2/10    322   359 ..     1    43 []    20.2     0.29
SM00706    3/10    891   924 ..     1    43 []    18.2      1.1
SM00706    4/10    932   967 ..     1    43 []    28.1   0.0012
SM00706    5/10    978  1016 ..     1    43 []    38.5  9.1e-07
SM00706    6/10   1166  1201 ..     1    43 []    28.0   0.0013
SM00706    7/10   1209  1248 ..     1    43 []    44.6  1.3e-08
SM00706    8/10   1259  1301 ..     1    43 []    40.2  2.8e-07
SM00706    9/10   1310  1344 ..     1    43 []    31.3  0.00014
SM00706   10/10   1353  1387 ..     1    43 []    29.3  0.00054

Alignments of top-scoring domains:
SM00320: domain 1 of 3, from 27 to 67: score 3.6, E = 1.3e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  ++++ kg ++   V  ++  +++     ++++a+gs+ g ++l+
    KIAA0329    27    NaIPTKIQKGFRS--IVVYLTALDTN-----GDYIAVGSsIGMLYLY 66   

                   d<-*
                       
    KIAA0329    67 C    67   

SM00320: domain 2 of 3, from 71 to 111: score 7.0, E = 39
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   + ++g t   ++t v+  +       ++l+a+g   g + ++
    KIAA0329    71    NqMRKYNFEGKTE--SITVVKLLSCF-----DDLVAAGTaSGRVAVF 110  

                   d<-*
                       
    KIAA0329   111 Q    111  

SM00320: domain 3 of 3, from 119 to 161: score 20.8, E = 0.19
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                       +k+lr ++ ++ H++  ++t++a+sp+g        l+sg++ g+i
    KIAA0329   119    RnKQLRRFDvtgIHKN--SITALAWSPNG------MKLFSGDdKGKI 157  

                   rlWd<-*
                      +   
    KIAA0329   158 VYSS    161  

SM00706: domain 1 of 10, from 286 to 320: score 15.2, E = 3.1
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavns.dgniyrRtg<-*
                      +s+++ +          +l  vs+  +e W+++++   iy ++    
    KIAA0329   286    GSCSLPE---------RHLGLVSCFFQEGWVLSWnEYSIYLLDT    320  

SM00706: domain 2 of 10, from 322 to 359: score 20.2, E = 0.29
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-*
                      ++ t+ ++++     +g +++vs++ +e++ +  d+ni r +    
    KIAA0329   322    NQATIAGLEG-----SGDIVSVSCTENEIFFLKGDRNIIRISS    359  

SM00706: domain 3 of 10, from 891 to 924: score 18.2, E = 1.1
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-*
                      ++W++            + + v+ ++d+ W + + g++y  tg   
    KIAA0329   891    RHWYEAL---------PQAVFVALSDDTAWIIRTSGDLYLQTG    924  

SM00706: domain 4 of 10, from 932 to 967: score 28.1, E = 0.0012
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-*
                       + ++v++p        +l+q+++ +++VWa++ ++ +++R+g   
    KIAA0329   932    ARAVKVDCP-------YPLSQITARNNVVWALTEQRALLYREG    967  

SM00706: domain 5 of 10, from 978 to 1016: score 38.5, E = 9.1e-07
                   *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-*
                      +++++v+++q     + e ++++ g+++++Wa++ +gn+++Rtg   
    KIAA0329   978    WKCDIVSERQ-----ALEPVCITLGDqQTLWALDIHGNLWFRTG    1016 

SM00706: domain 6 of 10, from 1166 to 1201: score 28.0, E = 0.0013
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-*
                       s +q+p+++       e++  ++++d++Wa++s g+++ Rt    
    KIAA0329  1166    PSTVQLPPEA-------EMRAYAACQDALWALDSLGQVFIRTL    1201 

SM00706: domain 7 of 10, from 1209 to 1248: score 44.6, E = 1.3e-08
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-*
                      ++Wt++++ q   l++++l++ ++g++++Wa++s+g +y+R+g   
    KIAA0329  1209    MHWTRLDLSQ---LGAVKLTSLACGNQHIWACDSRGGVYFRVG    1248 

SM00706: domain 8 of 10, from 1259 to 1301: score 40.2, E = 2.8e-07
                   *->ssWtqvptpq.k.gslsggelkqvsvgp..deVWavnsdgniyrRtg
                       +W+++++p+++ g    ++l++v+ +p+++++W+++s++n+++Rtg
    KIAA0329  1259    PAWIMIEPPVqPaG----VSLVSVHSSPndQMLWVLDSRWNVHVRTG 1301 

                   <-*
                      
    KIAA0329     -     -    

SM00706: domain 9 of 10, from 1310 to 1344: score 31.3, E = 0.00014
                   *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-*
                       +W++vp        g + +q + ++++VWa + +g++ rR+g   
    KIAA0329  1310    TAWEHVP--------GLQACQLALSTRTVWARCPNGDLARRYG    1344 

SM00706: domain 10 of 10, from 1353 to 1387: score 29.3, E = 0.00054
                   *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-*
                      + W ++p         g++++ +v+++de+Wav+  g ++ R     
    KIAA0329  1353    DYWKKIP---------GSVSCFTVTAsDELWAVGPPGYLLQRLT    1387 

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