# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00872.fasta.huge -Q ../query/KIAA0329.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0329, 1417 aa vs ./tmplib.23147 library 1986088 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.2725+/-0.00645; mu= 11.6921+/- 0.439 mean_var=161.2777+/-37.004, 0's: 0 Z-trim: 4 B-trim: 3 in 1/39 Lambda= 0.100992 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0297 ( 1271 res) hf00325 (1271) 8656 1274.6 0 KIAA1017 ( 1095 res) hk07512s1 (1095) 384 69.2 4.5e-12 KIAA1358 ( 1123 res) fj02029 (1123) 242 48.6 7.7e-06 >>KIAA0297 ( 1271 res) hf00325 (1271 aa) initn: 8656 init1: 8656 opt: 8656 Z-score: 6821.5 bits: 1274.6 E(): 0 Smith-Waterman score: 8656; 100.000% identity (100.000% similar) in 1271 aa overlap (147-1417:1-1271) 120 130 140 150 160 170 KIAA03 PGRNKQLRRFDVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLE :::::::::::::::::::::::::::::: KIAA02 KLFSGDDKGKIVYSSLDLDQGLCNSQLVLE 10 20 30 180 190 200 210 220 230 KIAA03 EPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 EPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSD 40 50 60 70 80 90 240 250 260 270 280 290 KIAA03 LTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 LTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLG 100 110 120 130 140 150 300 310 320 330 340 350 KIAA03 LVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 LVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIR 160 170 180 190 200 210 360 370 380 390 400 410 KIAA03 ISSRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 ISSRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRS 220 230 240 250 260 270 420 430 440 450 460 470 KIAA03 SSLNSTDSGSGLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 SSLNSTDSGSGLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKK 280 290 300 310 320 330 480 490 500 510 520 530 KIAA03 KTEGGSRSTCHSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 KTEGGSRSTCHSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSF 340 350 360 370 380 390 540 550 560 570 580 590 KIAA03 NGEVNGVPQENTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 NGEVNGVPQENTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVG 400 410 420 430 440 450 600 610 620 630 640 650 KIAA03 GSDVTGLGDEPCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 GSDVTGLGDEPCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTV 460 470 480 490 500 510 660 670 680 690 700 710 KIAA03 PSSLSWAPSAEQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 PSSLSWAPSAEQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKE 520 530 540 550 560 570 720 730 740 750 760 770 KIAA03 IPISERVLGSVGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 IPISERVLGSVGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETS 580 590 600 610 620 630 780 790 800 810 820 830 KIAA03 VTELGPSCSQQDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 VTELGPSCSQQDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKG 640 650 660 670 680 690 840 850 860 870 880 890 KIAA03 GLFCSALPGAGLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 GLFCSALPGAGLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEA 700 710 720 730 740 750 900 910 920 930 940 950 KIAA03 LPQAVFVALSDDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 LPQAVFVALSDDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWAL 760 770 780 790 800 810 960 970 980 990 1000 1010 KIAA03 TEQRALLYREGVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 TEQRALLYREGVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTG 820 830 840 850 860 870 1020 1030 1040 1050 1060 1070 KIAA03 IISKKPQGDDDHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 IISKKPQGDDDHWWQVSITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFW 880 890 900 910 920 930 1080 1090 1100 1110 1120 1130 KIAA03 SQQLQCQPSLLGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 SQQLQCQPSLLGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASA 940 950 960 970 980 990 1140 1150 1160 1170 1180 1190 KIAA03 APTKEGSFLWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 APTKEGSFLWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQV 1000 1010 1020 1030 1040 1050 1200 1210 1220 1230 1240 1250 KIAA03 FIRTLSKSCPTGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 FIRTLSKSCPTGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSL 1060 1070 1080 1090 1100 1110 1260 1270 1280 1290 1300 1310 KIAA03 MLPAWIMIEPPVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 MLPAWIMIEPPVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVP 1120 1130 1140 1150 1160 1170 1320 1330 1340 1350 1360 1370 KIAA03 GLQACQLALSTRTVWARCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA02 GLQACQLALSTRTVWARCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAV 1180 1190 1200 1210 1220 1230 1380 1390 1400 1410 KIAA03 GPPGYLLQRLTKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI ::::::::::::::::::::::::::::::::::::::::: KIAA02 GPPGYLLQRLTKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI 1240 1250 1260 1270 >>KIAA1017 ( 1095 res) hk07512s1 (1095 aa) initn: 183 init1: 94 opt: 384 Z-score: 308.6 bits: 69.2 E(): 4.5e-12 Smith-Waterman score: 398; 29.565% identity (58.551% similar) in 345 aa overlap (45-372:4-335) 20 30 40 50 60 70 KIAA03 TFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLYCRHLNQMR :.. .. ..:.::: : :.: .. . : KIAA10 CACTSIAVSRKWLALGSSGGGLHLIQKEGWKHR 10 20 30 80 90 100 110 120 130 KIAA03 KYNFEGKTESITVVKLLSCF--DDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIH : .. :. .. .. :. :: ::..:..: :.:..: . :. .:. :.. : KIAA10 L--FLSHREG-AISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMY---VSSEH 40 50 60 70 80 140 150 160 170 180 KIAA03 KNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEPSSIVQ :. .::: :. ...: :: ::. .:. .. . : . : .:: KIAA10 KGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQ 90 100 110 120 130 140 190 200 210 220 230 240 KIAA03 LDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YAS ::: . ::.:.: ::.: ::... .::.. : :..::::.:: :. .. : : . KIAA10 LDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCA 150 160 170 180 190 200 250 260 270 280 290 KIAA03 RPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERHLGLVS ::: :.:... : : .: .: .. : .. .:. . ..: :: .: .: KIAA10 RPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS 210 220 230 240 250 260 300 310 320 330 340 350 KIAA03 CFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS- : ::.:.: .::.. : .. : :: .:. .::.: :. . .. ..: KIAA10 ----EHCVLTWTERGIYIFIPQNVQVLLWSE-VKDIQDVAVCRNELFCLHLNGKVSHLSL 270 280 290 300 310 320 360 370 380 390 400 410 KIAA03 -SRPEGLTSTVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSS : . . .: :: KIAA10 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 330 340 350 360 370 380 >>KIAA1358 ( 1123 res) fj02029 (1123 aa) initn: 323 init1: 113 opt: 242 Z-score: 196.7 bits: 48.6 E(): 7.7e-06 Smith-Waterman score: 270; 30.055% identity (56.831% similar) in 183 aa overlap (1186-1364:168-339) 1160 1170 1180 1190 1200 1210 KIAA03 SVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRT-LSKSCPTGMHWTRL ..::.. :.:. : .:.: : : :. : KIAA13 SKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHSNPEGSSWSLL 140 150 160 170 180 190 1220 1230 1240 1250 1260 1270 KIAA03 DLSQLGAVKLTSLACGNQHI-WACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGV : : : ....:: . . :: .: . : : . ::. .: ..::: . :: KIAA13 DTP--GEV--VQISCGPHDLLWATLWEGQALVREGINRSNPKG--SSWSIVEPPGSENGV 200 210 220 230 240 250 1280 1290 1300 1310 1320 1330 KIAA03 SLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAW-EHVPGLQACQLALSTRTVWA .:: : ..:.. . :.: : :.. . : ::.: : : . ..... . ::. KIAA13 MHISVGVS----VVWAVTKDWKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGMNDQ-VWG 260 270 280 290 300 1340 1350 1360 1370 1380 1390 KIAA03 -RCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRLTKTFS : . . : ::: .. .: :: : .. : KIAA13 IGCEDRAVYFRQGVTPSELSGKTWKAIIAARECDRSHSGSSSSLLSAGCFFGDEVRGSGE 310 320 330 340 350 360 1400 1410 KIAA03 HSHGTQKSSQAAMPHPEDLEDEWEVI KIAA13 SAPSDTDASSEVERPGPGQILPAEPLDDSKNATGNSASGLGAGRTAEDTVEDACPAEGSR 370 380 390 400 410 420 1417 residues in 1 query sequences 1986088 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:52 2008 done: Thu Dec 18 15:16:53 2008 Total Scan time: 0.830 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]