hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23504577/chunk_1/iprscan-20080501-23504577.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0326 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 536.9 8.4e-157 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/19 208 230 .. 1 23 [] 32.8 4.6e-05 SM00355 2/19 236 258 .. 1 23 [] 27.1 0.0024 SM00355 3/19 264 286 .. 1 23 [] 32.2 7.3e-05 SM00355 4/19 292 314 .. 1 23 [] 29.9 0.00036 SM00355 5/19 320 342 .. 1 23 [] 24.3 0.017 SM00355 6/19 348 370 .. 1 23 [] 31.3 0.00013 SM00355 7/19 376 398 .. 1 23 [] 31.5 0.00012 SM00355 8/19 404 426 .. 1 23 [] 28.2 0.0012 SM00355 9/19 432 454 .. 1 23 [] 31.6 0.00011 SM00355 10/19 460 482 .. 1 23 [] 32.2 6.9e-05 SM00355 11/19 488 510 .. 1 23 [] 25.2 0.0093 SM00355 12/19 516 538 .. 1 23 [] 29.5 0.00046 SM00355 13/19 544 566 .. 1 23 [] 34.6 1.4e-05 SM00355 14/19 572 594 .. 1 23 [] 23.0 0.041 SM00355 15/19 627 649 .. 1 23 [] 24.9 0.011 SM00355 16/19 720 742 .. 1 23 [] 26.5 0.0038 SM00355 17/19 772 794 .. 1 23 [] 25.7 0.0062 SM00355 18/19 826 848 .. 1 23 [] 25.7 0.0063 SM00355 19/19 900 922 .. 1 23 [] 20.9 0.19 Alignments of top-scoring domains: SM00355: domain 1 of 19, from 208 to 230: score 32.8, E = 4.6e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksfs+++ L rH+r+H KIAA0326 208 YICNE-CGKSFSQWsKLLRHQRIH 230 SM00355: domain 2 of 19, from 236 to 258: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgksf++ ++L++H+r+H KIAA0326 236 NTCSE-CGKSFTQSsHLVQHQRTH 258 SM00355: domain 3 of 19, from 264 to 286: score 32.2, E = 7.3e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp Cgk+fs+ ++L++H+r+H KIAA0326 264 YKCPD-CGKCFSWSsNLVQHQRTH 286 SM00355: domain 4 of 19, from 292 to 314: score 29.9, E = 0.00036 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C k f++ ++L++H+r+H KIAA0326 292 YKCTE-CEKAFTQStNLIKHQRSH 314 SM00355: domain 5 of 19, from 320 to 342: score 24.3, E = 0.017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + C + f + ++L++H+ +H KIAA0326 320 YKCGE-CRRAFYRSsDLIQHQATH 342 SM00355: domain 6 of 19, from 348 to 370: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ Cgk+f + ++L +H+++H KIAA0326 348 YKCPE-CGKRFGQNhNLLKHQKIH 370 SM00355: domain 7 of 19, from 376 to 398: score 31.5, E = 0.00012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf + ++L++H+r+H KIAA0326 376 YRCTE-CGKSFIQSsELTQHQRTH 398 SM00355: domain 8 of 19, from 404 to 426: score 28.2, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf + + L++H+r+H KIAA0326 404 YECLE-CGKSFGHSsTLIKHQRTH 426 SM00355: domain 9 of 19, from 432 to 454: score 31.6, E = 0.00011 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ Cgk+f+ L rH+r+H KIAA0326 432 FKCPV-CGKTFTLSaTLLRHQRTH 454 SM00355: domain 10 of 19, from 460 to 482: score 32.2, E = 6.9e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ Cgksfs ++L++H+r+H KIAA0326 460 YKCPE-CGKSFSVSsNLINHQRIH 482 SM00355: domain 11 of 19, from 488 to 510: score 25.2, E = 0.0093 *->ykCpigCgksfssk.aLkrHmrvH<-* y C Cgksf + L+rH+r+H KIAA0326 488 YICAD-CGKSFIMSsTLIRHQRIH 510 SM00355: domain 12 of 19, from 516 to 538: score 29.5, E = 0.00046 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgksf + ++L++H r+H KIAA0326 516 YKCSD-CGKSFIRSsHLIQHRRTH 538 SM00355: domain 13 of 19, from 544 to 566: score 34.6, E = 1.4e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ Cgksfs+ ++L+ H+r+H KIAA0326 544 YKCPE-CGKSFSQSsNLITHVRTH 566 SM00355: domain 14 of 19, from 572 to 594: score 23.0, E = 0.041 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ Cgk f +++L++H +H KIAA0326 572 FVCSD-CGKAFLEAhELEQHRVIH 594 SM00355: domain 15 of 19, from 627 to 649: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgk f++++ + +H+r+H KIAA0326 627 HKCLV-CGKGFNDEgIFMQHQRIH 649 SM00355: domain 16 of 19, from 720 to 742: score 26.5, E = 0.0038 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+sf +++ L +H+ +H KIAA0326 720 YICSH-CGESFLDRsVLLQHQLTH 742 SM00355: domain 17 of 19, from 772 to 794: score 25.7, E = 0.0062 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C++sf ++L H++vH KIAA0326 772 FKCPE-CKQSFGLSsELLLHQKVH 794 SM00355: domain 18 of 19, from 826 to 848: score 25.7, E = 0.0063 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C sf ++ aL+rH+ +H KIAA0326 826 YRCSD-CRASFLDRvALTRHQETH 848 SM00355: domain 19 of 19, from 900 to 922: score 20.9, E = 0.19 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cp+ Cg f+ aL H H KIAA0326 900 YLCPE-CGAGFTEVaALLLHRSCH 922 //