hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23504577/chunk_1/iprscan-20080501-23504577.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0326 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 628.0 7.4e-186 19 PF00096.16.fs Zinc finger, C2H2 type 590.6 1.3e-174 19 PF01096.9.fs Transcription factor S-II (TFIIS) 66.6 6.5e-20 15 PF01286.9.fs XPA protein N-terminal 61.0 1.3e-16 14 PF07754.2.fs Domain of unknown function (DUF1610) 58.1 1.5e-14 13 PF07754.2.ls Domain of unknown function (DUF1610) 38.8 1.8e-08 6 PF08792.1.fs A2L zinc ribbon domain 24.1 2.2e-05 11 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 14.4 9.5e-05 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/19 208 230 .. 1 24 [] 37.7 3.8e-08 PF00096.16.ls 1/19 208 230 .. 1 24 [] 39.6 9.8e-09 PF00096.16.ls 2/19 236 258 .. 1 24 [] 32.6 1.2e-06 PF00096.16.fs 2/19 236 258 .. 1 24 [] 30.7 2.2e-06 PF00096.16.ls 3/19 264 286 .. 1 24 [] 41.3 3e-09 PF00096.16.fs 3/19 264 286 .. 1 24 [] 39.4 1.2e-08 PF00096.16.ls 4/19 292 314 .. 1 24 [] 36.5 8.8e-08 PF00096.16.fs 4/19 292 314 .. 1 24 [] 34.5 2.4e-07 PF00096.16.fs 5/19 320 342 .. 1 24 [] 29.3 4.8e-06 PF00096.16.ls 5/19 320 342 .. 1 24 [] 31.2 3.3e-06 PF00096.16.ls 6/19 348 370 .. 1 24 [] 36.8 6.7e-08 PF00096.16.fs 6/19 348 370 .. 1 24 [] 34.9 1.9e-07 PF00096.16.ls 7/19 376 398 .. 1 24 [] 38.6 1.9e-08 PF00096.16.fs 7/19 376 398 .. 1 24 [] 36.7 6.9e-08 PF00096.16.ls 8/19 404 426 .. 1 24 [] 36.0 1.2e-07 PF00096.16.fs 8/19 404 426 .. 1 24 [] 34.1 3.1e-07 PF00096.16.ls 9/19 432 454 .. 1 24 [] 38.2 2.6e-08 PF00096.16.fs 9/19 432 454 .. 1 24 [] 36.2 8.8e-08 PF00096.16.ls 10/19 460 482 .. 1 24 [] 41.3 3e-09 PF00096.16.fs 10/19 460 482 .. 1 24 [] 39.4 1.2e-08 PF00096.16.ls 11/19 488 510 .. 1 24 [] 35.3 1.9e-07 PF00096.16.fs 11/19 488 510 .. 1 24 [] 33.4 4.6e-07 PF00096.16.ls 12/19 516 538 .. 1 24 [] 37.7 3.7e-08 PF00096.16.fs 12/19 516 538 .. 1 24 [] 35.7 1.2e-07 PF00096.16.ls 13/19 544 566 .. 1 24 [] 42.6 1.2e-09 PF00096.16.fs 13/19 544 566 .. 1 24 [] 40.6 4.8e-09 PF00096.16.fs 14/19 572 594 .. 1 24 [] 23.2 0.00016 PF00096.16.ls 14/19 572 594 .. 1 24 [] 25.2 0.00022 PF00096.16.ls 15/19 627 649 .. 1 24 [] 21.2 0.0034 PF00096.16.fs 16/19 720 742 .. 1 24 [] 25.9 3.3e-05 PF00096.16.ls 16/19 720 742 .. 1 24 [] 27.9 3.4e-05 PF00096.16.fs 17/19 772 794 .. 1 24 [] 26.2 2.7e-05 PF00096.16.ls 17/19 772 794 .. 1 24 [] 28.2 2.7e-05 PF00096.16.ls 18/19 826 848 .. 1 24 [] 26.6 8.2e-05 PF00096.16.fs 18/19 826 848 .. 1 24 [] 24.6 6.9e-05 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 19, from 208 to 230: score 37.7, E = 3.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs++s L rH+r+H KIAA0326 208 YICN-ECGKSFSQWSKLLRHQRIH 230 PF00096.16.ls: domain 1 of 19, from 208 to 230: score 39.6, E = 9.8e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs++s L rH+r+H KIAA0326 208 YICN-ECGKSFSQWSKLLRHQRIH 230 PF00096.16.ls: domain 2 of 19, from 236 to 258: score 32.6, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +CgksF+++s+L +H+rtH KIAA0326 236 NTCS-ECGKSFTQSSHLVQHQRTH 258 PF00096.16.fs: domain 2 of 19, from 236 to 258: score 30.7, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +CgksF+++s+L +H+rtH KIAA0326 236 NTCS-ECGKSFTQSSHLVQHQRTH 258 PF00096.16.ls: domain 3 of 19, from 264 to 286: score 41.3, E = 3e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp dCgk+Fs +snL +H+rtH KIAA0326 264 YKCP-DCGKCFSWSSNLVQHQRTH 286 PF00096.16.fs: domain 3 of 19, from 264 to 286: score 39.4, E = 1.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp dCgk+Fs +snL +H+rtH KIAA0326 264 YKCP-DCGKCFSWSSNLVQHQRTH 286 PF00096.16.ls: domain 4 of 19, from 292 to 314: score 36.5, E = 8.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+++ nL +H+r+H KIAA0326 292 YKCT-ECEKAFTQSTNLIKHQRSH 314 PF00096.16.fs: domain 4 of 19, from 292 to 314: score 34.5, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F+++ nL +H+r+H KIAA0326 292 YKCT-ECEKAFTQSTNLIKHQRSH 314 PF00096.16.fs: domain 5 of 19, from 320 to 342: score 29.3, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C ++F r+s+L +H+ tH KIAA0326 320 YKCG-ECRRAFYRSSDLIQHQATH 342 PF00096.16.ls: domain 5 of 19, from 320 to 342: score 31.2, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C ++F r+s+L +H+ tH KIAA0326 320 YKCG-ECRRAFYRSSDLIQHQATH 342 PF00096.16.ls: domain 6 of 19, from 348 to 370: score 36.8, E = 6.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +Cgk+F +++nL +H+++H KIAA0326 348 YKCP-ECGKRFGQNHNLLKHQKIH 370 PF00096.16.fs: domain 6 of 19, from 348 to 370: score 34.9, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +Cgk+F +++nL +H+++H KIAA0326 348 YKCP-ECGKRFGQNHNLLKHQKIH 370 PF00096.16.ls: domain 7 of 19, from 376 to 398: score 38.6, E = 1.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s+L++H+rtH KIAA0326 376 YRCT-ECGKSFIQSSELTQHQRTH 398 PF00096.16.fs: domain 7 of 19, from 376 to 398: score 36.7, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s+L++H+rtH KIAA0326 376 YRCT-ECGKSFIQSSELTQHQRTH 398 PF00096.16.ls: domain 8 of 19, from 404 to 426: score 36.0, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF ++s+L +H+rtH KIAA0326 404 YECL-ECGKSFGHSSTLIKHQRTH 426 PF00096.16.fs: domain 8 of 19, from 404 to 426: score 34.1, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF ++s+L +H+rtH KIAA0326 404 YECL-ECGKSFGHSSTLIKHQRTH 426 PF00096.16.ls: domain 9 of 19, from 432 to 454: score 38.2, E = 2.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +Cgk+F+ +++L rH+rtH KIAA0326 432 FKCP-VCGKTFTLSATLLRHQRTH 454 PF00096.16.fs: domain 9 of 19, from 432 to 454: score 36.2, E = 8.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +Cgk+F+ +++L rH+rtH KIAA0326 432 FKCP-VCGKTFTLSATLLRHQRTH 454 PF00096.16.ls: domain 10 of 19, from 460 to 482: score 41.3, E = 3e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFs +snL +H+r+H KIAA0326 460 YKCP-ECGKSFSVSSNLINHQRIH 482 PF00096.16.fs: domain 10 of 19, from 460 to 482: score 39.4, E = 1.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFs +snL +H+r+H KIAA0326 460 YKCP-ECGKSFSVSSNLINHQRIH 482 PF00096.16.ls: domain 11 of 19, from 488 to 510: score 35.3, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C dCgksF +s+L rH+r+H KIAA0326 488 YICA-DCGKSFIMSSTLIRHQRIH 510 PF00096.16.fs: domain 11 of 19, from 488 to 510: score 33.4, E = 4.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C dCgksF +s+L rH+r+H KIAA0326 488 YICA-DCGKSFIMSSTLIRHQRIH 510 PF00096.16.ls: domain 12 of 19, from 516 to 538: score 37.7, E = 3.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgksF r+s+L +H+rtH KIAA0326 516 YKCS-DCGKSFIRSSHLIQHRRTH 538 PF00096.16.fs: domain 12 of 19, from 516 to 538: score 35.7, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgksF r+s+L +H+rtH KIAA0326 516 YKCS-DCGKSFIRSSHLIQHRRTH 538 PF00096.16.ls: domain 13 of 19, from 544 to 566: score 42.6, E = 1.2e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFs++snL +H rtH KIAA0326 544 YKCP-ECGKSFSQSSNLITHVRTH 566 PF00096.16.fs: domain 13 of 19, from 544 to 566: score 40.6, E = 4.8e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykCp +CgksFs++snL +H rtH KIAA0326 544 YKCP-ECGKSFSQSSNLITHVRTH 566 PF00096.16.fs: domain 14 of 19, from 572 to 594: score 23.2, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F ++L++H+ +H KIAA0326 572 FVCS-DCGKAFLEAHELEQHRVIH 594 PF00096.16.ls: domain 14 of 19, from 572 to 594: score 25.2, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F ++L++H+ +H KIAA0326 572 FVCS-DCGKAFLEAHELEQHRVIH 594 PF00096.16.ls: domain 15 of 19, from 627 to 649: score 21.2, E = 0.0034 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgk F++ + + +H+r+H KIAA0326 627 HKCL-VCGKGFNDEGIFMQHQRIH 649 PF00096.16.fs: domain 16 of 19, from 720 to 742: score 25.9, E = 3.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+sF ++s L +H+ tH KIAA0326 720 YICS-HCGESFLDRSVLLQHQLTH 742 PF00096.16.ls: domain 16 of 19, from 720 to 742: score 27.9, E = 3.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+sF ++s L +H+ tH KIAA0326 720 YICS-HCGESFLDRSVLLQHQLTH 742 PF00096.16.fs: domain 17 of 19, from 772 to 794: score 26.2, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C++sF +s+L H+++H KIAA0326 772 FKCP-ECKQSFGLSSELLLHQKVH 794 PF00096.16.ls: domain 17 of 19, from 772 to 794: score 28.2, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kCp +C++sF +s+L H+++H KIAA0326 772 FKCP-ECKQSFGLSSELLLHQKVH 794 PF00096.16.ls: domain 18 of 19, from 826 to 848: score 26.6, E = 8.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC sF ++ L+rH+ tH KIAA0326 826 YRCS-DCRASFLDRVALTRHQETH 848 PF00096.16.fs: domain 18 of 19, from 826 to 848: score 24.6, E = 6.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC sF ++ L+rH+ tH KIAA0326 826 YRCS-DCRASFLDRVALTRHQETH 848 //