# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00426.fasta.huge -Q ../query/KIAA0321.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0321, 1542 aa vs ./tmplib.23147 library 1985963 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.9643+/-0.00685; mu= 9.5015+/- 0.466 mean_var=168.8536+/-41.252, 0's: 0 Z-trim: 11 B-trim: 135 in 1/39 Lambda= 0.098700 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1362 ( 699 res) fj02381 ( 699) 268 51.2 8.6e-07 KIAA0305 ( 1547 res) hg00042 (1547) 233 46.6 4.7e-05 KIAA1643 ( 993 res) hh10131(revised) ( 993) 219 44.4 0.00014 KIAA1537 ( 619 res) fj02581s1 ( 619) 206 42.3 0.00036 KIAA0993 ( 1556 res) bf03014 (1556) 210 43.3 0.00046 KIAA0371 ( 1203 res) hh00252 (1203) 203 42.2 0.00076 KIAA0647 ( 1195 res) hj03819s1 (1195) 202 42.0 0.00084 KIAA1255 ( 1232 res) hh14633s1 (1232) 183 39.3 0.0056 >>KIAA1362 ( 699 res) fj02381 (699 aa) initn: 286 init1: 192 opt: 268 Z-score: 213.8 bits: 51.2 E(): 8.6e-07 Smith-Waterman score: 268; 36.036% identity (65.766% similar) in 111 aa overlap (797-906:537-644) 770 780 790 800 810 820 KIAA03 SAEFSPAAPPGISSIHSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCR ..: : : : :.:: ..::.: KIAA13 LEAISRAIEEYAKKRITFCPSRSLDEADSENKEEVSPLGSKA-PIWIPDTRATMCMICTS 510 520 530 540 550 560 830 840 850 860 870 880 KIAA03 EHFTMFNRRHHCRRCGRLVCSSCSTKKMVVEGCRENPARVCDQCYSYCNKDVPEEPSEKP : ::. :::::: ::..::..::..:. .. ...:::::..:.. .: . .. : . KIAA13 E-FTLTWRRHHCRACGKIVCQACSSNKYGLDYLKNQPARVCEHCFQELQK-LDHQHSPRI 570 580 590 600 610 620 890 900 910 920 930 940 KIAA03 EALDSSKSESPPYSFVVR-VPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILN . . :: : : :.. .: KIAA13 GSPGNHKSPSSALSSVLHSIPSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWK 630 640 650 660 670 680 >>KIAA0305 ( 1547 res) hg00042 (1547 aa) initn: 201 init1: 119 opt: 233 Z-score: 182.6 bits: 46.6 E(): 4.7e-05 Smith-Waterman score: 233; 27.976% identity (52.976% similar) in 168 aa overlap (743-910:689-847) 720 730 740 750 760 770 KIAA03 IGFTMDEVDSLLSRYAEKALDFPYPQREKRSDSVIHLQEIVHQAADPETLPRSPSAEFSP .:.:. . . ..:::.. : .. KIAA03 QLFSLPSRTRSSKDLNKPDVPDTIESEPSTADTVVPITCAIDSTADPQVSFNSNYIDIES 660 670 680 690 700 710 780 790 800 810 820 830 KIAA03 AAPPGISSIHSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMF . : : . . : : : . .. .: :. :::: :: :. .::. KIAA03 NSEGGSSFV---TANEDSVPENTCKEGLVLGQKQPT---WVPDSEAPNCM-NCQVKFTFT 720 730 740 750 760 770 840 850 860 870 880 890 KIAA03 NRRHHCRRCGRLVCSSCSTKKMVVEGCRENPARVCDQCYSYCNKDVPEEPSEKPEALDSS .:::::: ::.. :. : ..: .. :. :::: :: .: : .: . .. KIAA03 KRRHHCRACGKVFCGVCCNRKCKLQYL-EKEARVCVVCYETISKAQAFERMMSPTG-SNL 780 790 800 810 820 900 910 920 930 940 950 KIAA03 KSESPPYSFVVRVPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILNLHRDSIA ::. .:. :. .. KIAA03 KSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGE 830 840 850 860 870 880 >>KIAA1643 ( 993 res) hh10131(revised) (993 aa) initn: 200 init1: 124 opt: 219 Z-score: 174.2 bits: 44.4 E(): 0.00014 Smith-Waterman score: 219; 40.580% identity (69.565% similar) in 69 aa overlap (806-873:917-981) 780 790 800 810 820 830 KIAA03 PGISSIHSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMFNRR :: .:::::. ..: . :. ::.. :. KIAA16 SAALEDCALCQETLSSSELAAKTRDGDFEDPP---EWVPDEACGFC-TACKAPFTVIRRK 890 900 910 920 930 940 840 850 860 870 880 890 KIAA03 HHCRRCGRLVCSSCSTKKMVVEGCRE-NPARVCDQCYSYCNKDVPEEPSEKPEALDSSKS :::: ::.. :: ::... . . .:.::: .:: . KIAA16 HHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKAGL 950 960 970 980 990 900 910 920 930 940 950 KIAA03 ESPPYSFVVRVPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILNLHRDSIACG >>KIAA1537 ( 619 res) fj02581s1 (619 aa) initn: 97 init1: 97 opt: 206 Z-score: 166.8 bits: 42.3 E(): 0.00036 Smith-Waterman score: 206; 33.333% identity (70.833% similar) in 72 aa overlap (812-879:550-619) 790 800 810 820 830 840 KIAA03 HSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMFNRRHHCRRC :. :. . : .: .: :.. .:.:::: : KIAA15 ALQELGNKLSESKLKIEDIKEANKALQGLVWLKDKEATHCKLCEKE-FSLSKRKHHCRNC 520 530 540 550 560 570 850 860 870 880 890 KIAA03 GRLVCSSCSTKKMVVEGCRENPARVCDQCYSY----CNKDVPEEPSEKPEALDSSKSESP :.. :..:: ... . . .:.::::.:.. :....: KIAA15 GEIFCNACSDNELPLPSS-PKPVRVCDSCHALLIQRCSSNLP 580 590 600 610 900 910 920 930 940 950 KIAA03 PYSFVVRVPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILNLHRDSIACGHQL >>KIAA0993 ( 1556 res) bf03014 (1556 aa) initn: 187 init1: 130 opt: 210 Z-score: 164.9 bits: 43.3 E(): 0.00046 Smith-Waterman score: 210; 35.398% identity (58.407% similar) in 113 aa overlap (764-871:1434-1540) 740 750 760 770 780 KIAA03 FPYPQREKRSDSVIHLQEIVHQAADPETLPRSPSAEFSPAAPPGISSIHSPSL----RER :. .:. . .. :::. :: : : : KIAA09 VRNYSRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEVTALGISKDHSRILVGDSRGR 1410 1420 1430 1440 1450 1460 790 800 810 820 830 840 KIAA03 SFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMFNRRHHCRRCGRLVCSSC : . .: :. : : :: :: . : : .:.. .:::::: ::.: :..: KIAA09 VFSWSVSDQ----PGRSAADH-WVKDEGGDSCS-GCSVRFSLTERRHHCRNCGQLFCQKC 1470 1480 1490 1500 1510 850 860 870 880 890 900 KIAA03 STKKMVVEGCR-ENPARVCDQCYSYCNKDVPEEPSEKPEALDSSKSESPPYSFVVRVPKA : . .. . .:.:::..:: KIAA09 SRFQSEIKRLKISSPVRVCQNCYYNLQHERGSEDGPRNC 1520 1530 1540 1550 >>KIAA0371 ( 1203 res) hh00252 (1203 aa) initn: 152 init1: 105 opt: 203 Z-score: 160.9 bits: 42.2 E(): 0.00076 Smith-Waterman score: 203; 41.270% identity (69.841% similar) in 63 aa overlap (811-872:1120-1181) 790 800 810 820 830 840 KIAA03 IHSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMFNRRHHCRR .:.::. . :..: : . .:.:::: KIAA03 LDQNCLSRCSTEIFSEASWEQVDKQDTEMTRWLPDHLAAHCYAC-DSAFWLASRKHHCRN 1090 1100 1110 1120 1130 1140 850 860 870 880 890 KIAA03 CGRLVCSSCSTKKMVVEGCRE-NPARVCDQCYSYCNKDVPEEPSEKPEALDSSKSESPPY :: . :::: ..:. : . . .:.::: .::: KIAA03 CGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTSSSIDLELDKPIAATSN 1150 1160 1170 1180 1190 1200 900 910 920 930 940 950 KIAA03 SFVVRVPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILNLHRDSIACGHQLIE >>KIAA0647 ( 1195 res) hj03819s1 (1195 aa) initn: 248 init1: 103 opt: 202 Z-score: 160.2 bits: 42.0 E(): 0.00084 Smith-Waterman score: 202; 27.778% identity (51.667% similar) in 180 aa overlap (730-892:1026-1195) 700 710 720 730 740 750 KIAA03 AVQTLQQLLVGQEIGFTMDEVDSLLSRYAEKALDFPYPQR-EKRSDSVIHLQ---EIVHQ . .. : :. :. .: .:: .: : KIAA06 VPLNCPSPVPPLYLDDDGLPFPTDVIQHRLRQIEAGYKQEVEQLRRQVRELQMRLDIRHC 1000 1010 1020 1030 1040 1050 760 770 780 790 800 KIAA03 AADPETLPRSPSAEFS------PAAPPGISSIHSPS-LRERSFPPTQPSQEFVPPATPPA : : : . .:. . ..: :: . : : :. :.. .. : KIAA06 CAPPAEPPMDYEDDFTCLKESDGSDTEDFGSDHSEDCLSEASWEPVDKKETEVT------ 1060 1070 1080 1090 1100 810 820 830 840 850 860 KIAA03 RHQWVPDETESICMVC-CREHFTMFNRRHHCRRCGRLVCSSCSTKKMVVEGCR-ENPARV .::::. : :. : : .: . .:::::: :: . :..: :. . . .:. : KIAA06 --RWVPDHMASHCYNCDC--EFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLV 1110 1120 1130 1140 1150 1160 870 880 890 900 910 920 KIAA03 CDQCYSYCN----KDVPEEPSEKPEALDSSKSESPPYSFVVRVPKADEVEWILDLKEEEN :..:: . . ... . .:: : :: KIAA06 CNSCYEHIQVSRARELMSQQLKKPIATASS 1170 1180 1190 >>KIAA1255 ( 1232 res) hh14633s1 (1232 aa) initn: 156 init1: 119 opt: 183 Z-score: 145.4 bits: 39.3 E(): 0.0056 Smith-Waterman score: 183; 42.593% identity (75.926% similar) in 54 aa overlap (819-871:1171-1223) 790 800 810 820 830 840 KIAA03 RSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMFNRRHHCRRCGRLVCSS : :. : .: . .:.::::.::::.: . KIAA12 VNIFNYQVATKQLLFRLLDMLSKEPPWCDGSYCYECT-ARFGVTTRKHHCRHCGRLLCHK 1150 1160 1170 1180 1190 850 860 870 880 890 900 KIAA03 CSTKKM-VVEGCRENPARVCDQCYSYCNKDVPEEPSEKPEALDSSKSESPPYSFVVRVPK ::::.. ... ..:.:::. :. KIAA12 CSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS 1200 1210 1220 1230 1542 residues in 1 query sequences 1985963 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:21 2008 done: Thu Dec 18 15:16:23 2008 Total Scan time: 0.880 Total Display time: 0.280 Function used was FASTA [version 34.26.5 April 26, 2007]