hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23343670/chunk_1/iprscan-20080501-23343670.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0318 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00326 180.8 1.3e-49 3 SM00060 68.2 1e-15 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00326 1/3 224 287 .. 1 58 [] 53.2 3.5e-11 SM00060 1/3 351 431 .. 1 69 [] 21.3 0.14 SM00060 2/3 445 517 .. 1 69 [] 25.9 0.0056 SM00060 3/3 541 627 .. 1 69 [] 21.0 0.16 SM00326 2/3 905 969 .. 1 58 [] 52.1 7.3e-11 SM00326 3/3 1009 1072 .. 1 58 [] 75.5 6.5e-18 Alignments of top-scoring domains: SM00326: domain 1 of 3, from 224 to 287: score 53.2, E = 3.5e-11 *->eyvvAlYDyea......qnedELsFkkGDiitvleks.ddgWweGel +vA Y+y++ +++++ e EL++++G ++v + ++dg +eGel KIAA0318 224 HLCVARYSYNPfdgpneNPEAELPLTAGKYLYVYGDMdEDGFYEGEL 270 nrtGkeGlfPsnYVeeie<-* +G++Gl+Psn+V ++ KIAA0318 271 L-DGQRGLVPSNFVDFVQ 287 SM00060: domain 1 of 3, from 351 to 431: score 21.3, E = 0.14 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. + P+ +++ + sv + WepP +++ + + +Y + KIAA0318 351 VPYPRK---ITLIKQLAK------SVIVGWEPPavppgwgtVSSYNv 388 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ + + ++++++ ++ L a +Y+++V++v++ +G++ KIAA0318 389 lvdketrmnltlgsrtkALIEKLNMAA---CTYRISVQCVTS--RGSS 431 * KIAA0318 - - SM00060: domain 2 of 3, from 445 to 517: score 25.9, E = 0.0056 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... +Ps+ lrv ++t s++lsW p ++++++++ +++ KIAA0318 445 VVAPSH---LRVDNITQI------SAQLSWLPTnsnyshVIFLNeee 482 ..........ytltgLkPgaepwteYefrVrAvngndaGeg<-* + ++ + +y + +L+P+ Y+++V A+ + + + KIAA0318 483 fdivkaarykYQFFNLRPN----MAYKVKVLAKPH--QMPW 517 SM00060: domain 3 of 3, from 541 to 627: score 21.0, E = 0.16 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv P pP++ ++v + + +++++sW pP + + +++ +++ KIAA0318 541 PAPPQD---VTVQAGVTP-----ATIRVSWRPPvltptglsnganVT 579 gYr....................ytltgLkPgaepwteYefrVrAvngnd gY + +++++ ++ ++ +++ + l L+ ++Vr ++ KIAA0318 580 GYGvyakgqrvaevifptadstaVELVRLRSL----EAKGVTVRTLSA-- 623 aGeg<-* +Ge+ KIAA0318 624 QGES 627 SM00326: domain 2 of 3, from 905 to 969: score 52.1, E = 7.3e-11 *->eyvvAlYDyea........qnedELsFkkGDiitvleks.ddgWweG + +vAl+Dy++ + +++++ e+EL+Fk+G+ii v + + dg ++G KIAA0318 905 RIFVALFDYDPltmspnpdAAEEELPFKEGQIIKVYGDKdADGFYRG 951 elnrtGkeGlfPsnYVeeie<-* e + + Gl+P+n V ei+ KIAA0318 952 ETC--ARLGLIPCNMVSEIQ 969 SM00326: domain 3 of 3, from 1009 to 1072: score 75.5, E = 6.5e-18 *->eyvvAlYDyea.......qnedELsFkkGDiitvleks.ddgWweGe +++vAlYDy++++++++ + e EL+F GDiitv ++++dg ++Ge KIAA0318 1009 RRMVALYDYDPresspnvDVEAELTFCTGDIITVFGEIdEDGFYYGE 1055 lnrtGkeGlfPsnYVeeie<-* ln G++Gl+Psn++ee++ KIAA0318 1056 LN--GQKGLVPSNFLEEVP 1072 //