hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23343670/chunk_1/iprscan-20080501-23343670.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0318 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07653.7.ls Variant SH3 domain 167.1 4.1e-47 3 PF07653.7.fs Variant SH3 domain 163.0 2.5e-46 3 PF00018.18.ls SH3 domain 89.4 1e-23 3 PF00018.18.fs SH3 domain 84.9 1.9e-22 3 PF00041.11.fs Fibronectin type III domain 44.4 4.1e-12 4 PF00041.11.ls Fibronectin type III domain 47.3 4.7e-11 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/3 224 286 .. 1 59 [] 16.9 0.00032 PF07653.7.ls 1/3 225 286 .. 1 69 [] 35.0 2.4e-07 PF07653.7.fs 1/3 235 286 .. 8 69 .] 34.6 2.6e-09 PF00041.11.ls 1/3 351 431 .. 1 84 [] 17.3 0.0027 PF00041.11.ls 2/3 445 517 .. 1 84 [] 17.8 0.0024 PF00041.11.ls 3/3 541 627 .. 1 84 [] 12.2 0.0088 PF00018.18.ls 2/3 905 968 .. 1 59 [] 20.3 0.00014 PF07653.7.ls 2/3 906 968 .. 1 69 [] 65.1 2.1e-16 PF07653.7.fs 2/3 906 968 .. 1 69 [] 63.2 1.4e-17 PF00018.18.fs 3/3 1009 1071 .. 1 59 [] 50.3 5.6e-13 PF00018.18.ls 3/3 1009 1071 .. 1 59 [] 52.2 1.6e-12 PF07653.7.fs 3/3 1010 1071 .. 1 69 [] 65.2 3.9e-18 PF07653.7.ls 3/3 1010 1071 .. 1 69 [] 67.0 5.5e-17 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 3, from 224 to 286: score 16.9, E = 0.00032 *->kkvvALYDYeare......sdELsFkkGDvitvleksddpgWWkgrl +vA Y Y++ ++++++++ EL+++ G ++v + d++g ++g+l KIAA0318 224 HLCVARYSYNPFDgpnenpEAELPLTAGKYLYVYGDMDEDGFYEGEL 270 kgtgGkeGliPsNYVepv<-* ++ G++Gl+PsN+V+ v KIAA0318 271 LD--GQRGLVPSNFVDFV 286 PF07653.7.ls: domain 1 of 3, from 225 to 286: score 35.0, E = 2.4e-07 *->ygraiedyva..AtdknenleeeeLslkkGdvvkVidvggskdddgw +++a +y++ + +++n+ e+eL l++G ++V+ g++d dg+ KIAA0318 225 LCVARYSYNPfdGPNENP---EAELPLTAGKYLYVY---GDMDEDGF 265 wegeslggGrrrRGlvPssaveel<-* +ege+ +G+r GlvPs++v + KIAA0318 266 YEGEL-LDGQR--GLVPSNFVDFV 286 PF07653.7.fs: domain 1 of 3, from 235 to 286: score 34.6, E = 2.6e-09 *->yvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwegeslggG +++ +++n+ e+eL l++G ++V+ g++d dg++ege+ +G KIAA0318 235 FDG-PNENP---EAELPLTAGKYLYVY---GDMDEDGFYEGEL-LDG 273 rrrRGlvPssaveel<-* +r GlvPs++v + KIAA0318 274 QR--GLVPSNFVDFV 286 PF00041.11.ls: domain 1 of 3, from 351 to 431: score 17.3, E = 0.0027 *->PsaPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkngg + P+ +t + + + s+ + W+pP ++g g++++Y+v + ++ + KIAA0318 351 VPYPRKITLIKQLAKSVIVGWEPPAvppGWGTVSSYNVLV-DKETRM 396 ewkeltvpgtttsytltgL.kPgteYtvrVqAvnggGGpeS<-* +lt+ + t + ++ L+ + +Y ++Vq v+ + S KIAA0318 397 ---NLTLGSRT-KALIEKLnMAACTYRISVQCVTSR--GSS 431 PF00041.11.ls: domain 2 of 3, from 445 to 517: score 17.8, E = 0.0024 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk aP+ l+v ++t s++lsW p n+ +++ v ++ ++ KIAA0318 445 VVAPSHLRVDNITQISAQLSWLPT--NSNYSH--VIF-LNE-EE--- 482 eltvpgttt.sytltgLkPgteYtvrVqAvnggGGpeS<-* +++ + ++ y++ +L+P++ Y+v+V A + ++ KIAA0318 483 -FDIVKAARyKYQFFNLRPNMAYKVKVLAKPHQ--MPW 517 PF00041.11.ls: domain 3 of 3, from 541 to 627: score 12.2, E = 0.0088 *->PsaPtnltvtdv.tstsltlsWspPt.......gngpitgYevtyRq P +P+++tv + t+ ++++sW pP ++++ ++++ +tgY v y KIAA0318 541 PAPPQDVTVQAGvTPATIRVSWRPPVltptglsNGANVTGYGV-Y-A 585 pknggewkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* + ++ + + +t ++l L+ v+V++++++ +eS KIAA0318 586 KGQRVAEVIFPTADST-AVELVRLRSLEAKGVTVRTLSAQ--GES 627 PF00018.18.ls: domain 2 of 3, from 905 to 968: score 20.3, E = 0.00014 *->kkvvALYDYeare........sdELsFkkGDvitvleksddpgWWkg +++vAL+DY++ + +++++ ++EL+Fk+G +i+v ++d++g ++g KIAA0318 905 RIFVALFDYDPLTmspnpdaaEEELPFKEGQIIKVYGDKDADGFYRG 951 rlkgtgGkeGliPsNYVepv<-* + + GliP+N V ++ KIAA0318 952 ETCA---RLGLIPCNMVSEI 968 PF07653.7.ls: domain 2 of 3, from 906 to 968: score 65.1, E = 2.1e-16 *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkVidvggskdddgw ++a++dy++ +++n++ +eeeL +k+G+++kV+ g+kd+dg+ KIAA0318 906 IFVALFDYDP-LTMSPNPdaAEEELPFKEGQIIKVY---GDKDADGF 948 wegeslggGrrrRGlvPssaveel<-* ++ge+ r Gl+P ++v+e+ KIAA0318 949 YRGET--CARL--GLIPCNMVSEI 968 PF07653.7.fs: domain 2 of 3, from 906 to 968: score 63.2, E = 1.4e-17 *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkVidvggskdddgw ++a++dy++ +++n++ +eeeL +k+G+++kV+ g+kd+dg+ KIAA0318 906 IFVALFDYDP-LTMSPNPdaAEEELPFKEGQIIKVY---GDKDADGF 948 wegeslggGrrrRGlvPssaveel<-* ++ge+ r Gl+P ++v+e+ KIAA0318 949 YRGET--CARL--GLIPCNMVSEI 968 PF00018.18.fs: domain 3 of 3, from 1009 to 1071: score 50.3, E = 5.6e-13 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr ++ vALYDY++re++++ + + EL+F GD+itv + d++g ++g+ KIAA0318 1009 RRMVALYDYDPREsspnvdvEAELTFCTGDIITVFGEIDEDGFYYGE 1055 lkgtgGkeGliPsNYVepv<-* l+ G++Gl+PsN++e+v KIAA0318 1056 LN---GQKGLVPSNFLEEV 1071 PF00018.18.ls: domain 3 of 3, from 1009 to 1071: score 52.2, E = 1.6e-12 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr ++ vALYDY++re++++ + + EL+F GD+itv + d++g ++g+ KIAA0318 1009 RRMVALYDYDPREsspnvdvEAELTFCTGDIITVFGEIDEDGFYYGE 1055 lkgtgGkeGliPsNYVepv<-* l+ G++Gl+PsN++e+v KIAA0318 1056 LN---GQKGLVPSNFLEEV 1071 PF07653.7.fs: domain 3 of 3, from 1010 to 1071: score 65.2, E = 3.9e-18 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww +++a+ dy++ + ++n ++e+eL+++ Gd++ V+ g+ d dg++ KIAA0318 1010 RMVALYDYDP-RESSPNVdVEAELTFCTGDIITVF---GEIDEDGFY 1052 egeslggGrrrRGlvPssaveel<-* +ge+ +G++ GlvPs+++ee+ KIAA0318 1053 YGEL--NGQK--GLVPSNFLEEV 1071 PF07653.7.ls: domain 3 of 3, from 1010 to 1071: score 67.0, E = 5.5e-17 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww +++a+ dy++ + ++n ++e+eL+++ Gd++ V+ g+ d dg++ KIAA0318 1010 RMVALYDYDP-RESSPNVdVEAELTFCTGDIITVF---GEIDEDGFY 1052 egeslggGrrrRGlvPssaveel<-* +ge+ +G++ GlvPs+++ee+ KIAA0318 1053 YGEL--NGQK--GLVPSNFLEEV 1071 //