hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23233362/chunk_1/iprscan-20080501-23233362.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0312 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00119 667.9 3.1e-196 1 SM00165 30.9 0.00018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00165 1/1 153 189 .. 1 38 [] 30.9 0.00018 SM00119 1/1 2854 3192 .] 1 407 [] 667.9 3.1e-196 Alignments of top-scoring domains: SM00165: domain 1 of 1, from 153 to 189: score 30.9, E = 0.00018 *->deekieqLleMGFsreeavdALratngNverAaeyLls<-* ++++++qL++MGF+re+a +AL +t e A+eyLl KIAA0312 153 NQQQLQQLMDMGFTREHAMEALLNTSTM-EQATEYLLT 189 SM00119: domain 1 of 1, from 2854 to 3192: score 667.9, E = 3.1e-196 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske ++sp+++k r L+I+f +gEeg D+GG+ rE+++ +s+e KIAA0312 2854 RKSPEEMKNR----LYIVF------EGEEGQDAGGLLREWYMIISRE 2890 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav +fnp +y+LFr+sp+d+ ++y+ p+ ++++ n+++ KIAA0312 2891 MFNP-MYALFRTSPGDR-----------VTYTINPSSHCNP-NHLS---- 2923 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP yF+f+Gr+++kA+y+nrll+++F+r+FyK++Lgk+ v ++D+es D+ KIAA0312 2924 YFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKS----VRYTDMESEDY 2969 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles ++y++Lv+L lend++++++d LtFs+ +++ KIAA0312 2970 HFYQGLVYL-------------------LENDVSTLGYD--LTFSTEVQE 2998 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG fg+++v++Lkp+G+ni VTeeNkkEYVhlv+++r+++ ++kql+AF+eG KIAA0312 2999 -FGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEG 3047 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq F+e+ip++l++ +F+e+ELeLLi+Gl+ +id+ddLksnTey+ +Y+ ns+ KIAA0312 3048 FYEIIPKRLIS-IFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSI 3094 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i +wFW++++sF++ +r+k+LqFVTG+s++P ++GFaaL+++NG+q KIAA0312 3095 QI---QWFWRALRSFDQADRAKFLQFVTGTSKVP--LQGFAALEGMNGIQ 3139 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg kF+I+++++ ++drLP+AhTCfN+L+LP Y+S e+Lr++LLlAI+e KIAA0312 3140 KFQIHRDDR----STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE- 3184 RiggeGFgls<-* ++eGFgl+ KIAA0312 3185 --CSEGFGLA 3192 //