hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23233362/chunk_1/iprscan-20080501-23233362.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0312 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 608.4 6.1e-180 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 606.5 2.3e-179 1 PF02825.10.fs WWE domain 48.1 3.5e-13 1 PF00627.21.fs UBA/TS-N domain 41.0 4.8e-11 1 PF02825.10.ls WWE domain 43.7 5.9e-10 1 PF00627.21.ls UBA/TS-N domain 43.0 9.4e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00627.21.ls 1/1 152 190 .. 1 41 [] 43.0 9.4e-10 PF00627.21.fs 1/1 152 190 .. 1 41 [] 41.0 4.8e-11 PF02809.10.ls 1/1 204 221 .. 1 18 [] 12.8 0.49 PF02809.10.fs 1/1 204 221 .. 1 18 [] 10.8 0.14 PF02825.10.ls 1/1 444 515 .. 1 89 [] 43.7 5.9e-10 PF02825.10.fs 1/1 452 513 .. 16 87 .. 48.1 3.5e-13 PF00632.15.fs 1/1 2885 3192 .] 1 351 [] 606.5 2.3e-179 PF00632.15.ls 1/1 2885 3192 .] 1 351 [] 608.4 6.1e-180 Alignments of top-scoring domains: PF00627.21.ls: domain 1 of 1, from 152 to 190: score 43.0, E = 9.4e-10 *->ideeavkqLreMTGfdreeakkALeatngnverAvewLleh<-* +++++++qL++M Gf+re+a +AL +t +e+A+e+Ll h KIAA0312 152 VNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH 190 PF00627.21.fs: domain 1 of 1, from 152 to 190: score 41.0, E = 4.8e-11 *->ideeavkqLreMTGfdreeakkALeatngnverAvewLleh<-* +++++++qL++M Gf+re+a +AL +t +e+A+e+Ll h KIAA0312 152 VNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH 190 PF02809.10.ls: domain 1 of 1, from 204 to 221: score 12.8, E = 0.49 *->mdEEedLqlALalSlqea<-* m+EE++ +A+a+Sl KIAA0312 204 MSEEDQMMRAIAMSLGQD 221 PF02809.10.fs: domain 1 of 1, from 204 to 221: score 10.8, E = 0.14 *->mdEEedLqlALalSlqea<-* m+EE++ +A+a+Sl KIAA0312 204 MSEEDQMMRAIAMSLGQD 221 PF02825.10.ls: domain 1 of 1, from 444 to 515: score 43.7, E = 5.9e-10 *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk ++++sn W+++ +d++g+W Ys +++ +I a++ ++ KIAA0312 444 YLQSNSNN-------WRWF--DDRSGRWCSYSASNNSTIDSAWKSGE 481 kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-* + ++ + + +r+Yt+ f tm+Q++eetg +R+V KIAA0312 482 T---SVR-F-TAGRRRYTVQFTTMVQVNEETG---NRRPVML 515 PF02825.10.fs: domain 1 of 1, from 452 to 513: score 48.1, E = 3.5e-13 *->WeyerSvddnggWrpYsphvsrlIEnayaakkkGsVtleqvCsicGr W+++ +d++g+W Ys +++ +I a++ +++ ++ + + +r KIAA0312 452 WRWF--DDRSGRWCSYSASNNSTIDSAWKSGET---SVR-F-TAGRR 491 pYtidfntmtQlreetgslsttReV<-* +Yt+ f tm+Q++eetg +R+V KIAA0312 492 RYTVQFTTMVQVNEETG---NRRPV 513 PF00632.15.fs: domain 1 of 1, from 2885 to 3192: score 606.5, E = 2.3e-179 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +++sre+fnP+y+LF++s d+ t++inP+s +np+ KIAA0312 2885 MIISREMFNPMYALFRTS----------PGDRVTYTINPSSH-CNPN 2920 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yFkF+Gri+++A+y++rll+++F+r+FYK++L gk+v + D+es D KIAA0312 2921 HLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHIL--GKSVRYTDMESED 2968 PelynSLkwllendgdrhILLgsledveedLe..LtFsveeessagfdpd ++y++L++llend++ +L+ +LtFs+e+++ f KIAA0312 2969 YHFYQGLVYLLENDVS-------------TLGydLTFSTEVQE---F--- 2999 asdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAF G++++++ LkPnG+nI VT+eNkkeYV+L++++r++ i+kQ+ AF KIAA0312 3000 ----GVCEVRD-LKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAF 3044 rkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYted ++GF+e+ip+rl+s+F+++ELelLi+G+p+ iD+ddLksnTeY+ Y ++ KIAA0312 3045 LEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEYH-KYQSN 3092 splktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGp s+ +IqwFW+++++f+q +r+k+LqFvTG+s+vPl+GF+aL+ G+nG+ KIAA0312 3093 SI--QIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALE--GMNGI 3138 pkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneet +kF+I++ + ++drLP+AHTCFN+LdLP Y+S E+Lr++LllAI+e++ KIAA0312 3139 QKFQIHRD--DRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECS 3186 eGFgle<-* eGFgl+ KIAA0312 3187 EGFGLA 3192 PF00632.15.ls: domain 1 of 1, from 2885 to 3192: score 608.4, E = 6.1e-180 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +++sre+fnP+y+LF++s d+ t++inP+s +np+ KIAA0312 2885 MIISREMFNPMYALFRTS----------PGDRVTYTINPSSH-CNPN 2920 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yFkF+Gri+++A+y++rll+++F+r+FYK++L gk+v + D+es D KIAA0312 2921 HLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHIL--GKSVRYTDMESED 2968 PelynSLkwllendgdrhILLgsledveedLe..LtFsveeessagfdpd ++y++L++llend++ +L+ +LtFs+e+++ f KIAA0312 2969 YHFYQGLVYLLENDVS-------------TLGydLTFSTEVQE---F--- 2999 asdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAF G++++++ LkPnG+nI VT+eNkkeYV+L++++r++ i+kQ+ AF KIAA0312 3000 ----GVCEVRD-LKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAF 3044 rkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYted ++GF+e+ip+rl+s+F+++ELelLi+G+p+ iD+ddLksnTeY+ Y ++ KIAA0312 3045 LEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEYH-KYQSN 3092 splktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGp s+ +IqwFW+++++f+q +r+k+LqFvTG+s+vPl+GF+aL+ G+nG+ KIAA0312 3093 SI--QIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALE--GMNGI 3138 pkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneet +kF+I++ + ++drLP+AHTCFN+LdLP Y+S E+Lr++LllAI+e++ KIAA0312 3139 QKFQIHRD--DRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECS 3186 eGFgle<-* eGFgl+ KIAA0312 3187 EGFGLA 3192 //