hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23213987/chunk_1/iprscan-20080501-23213987.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0311
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00150                                                  41.0    1.5e-07   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00150    1/3     787   888 ..     1   104 []    18.5     0.19
SM00150    2/3     967  1065 ..     1   104 []     2.4      5.3
SM00150    3/3    1086  1194 ..     1   104 []    20.2     0.13

Alignments of top-scoring domains:
SM00150: domain 1 of 3, from 787 to 888: score 18.5, E = 0.19
                   *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale
                      + F  ++de+++Wl+e++++  + +++      ++++  l+ H  ++
    KIAA0311   787    EGFVNKLDEFIQWLNEAMeTTENWTPPK--AEMDDLKLYLETHLSFK 831  

                   aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela
                     ++ h +  +a++e+g qL+e     +++ +++ l+ + ++W+eL+++ 
    KIAA0311   832 LNVDSHCALKEAVEEEGHQLLEL-IASHKAGLKDMLRMIASQWKELQRQI 880  

                   eeRrqkLe<-*
                   ++++ +     
    KIAA0311   881 KRQHSWIL    888  

SM00150: domain 2 of 3, from 967 to 1065: score 2.4, E = 5.3
                   *->qqFlrdadeleaWleekeqllssedlgeskDlesveallk.kHqale
                        F ++ +el +Wl ++e l+  +d    +Dl   e+++++  ++  
    KIAA0311   967    LDFDSEYQELWDWLIDMESLV--MDS---HDLMMSEEQQQhLYKRYS 1008 

                   aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela
                    e++ ++ +  +l    e+L++  g     ++ e+++ +ne+We L + +
    KIAA0311  1009 VEMSIRHLKKTELLSKVEALKKG-GVLLPNDLLEKVDSINEKWELLGKTL 1057 

                   eeRrqkLe<-*
                    e+ q      
    KIAA0311  1058 GEKIQDTM    1065 

SM00150: domain 3 of 3, from 1086 to 1194: score 20.2, E = 0.13
                   *->qqFlrdadeleaWleeke....qllssedlgeskDlesveallkkHq
                      +q+   ++el+ Wl+++e      +  ++        + e++l+ ++
    KIAA0311  1086    RQLEVRIKELKGWLRDTElfifNSCLRQEK---EGTMNTEKQLQYFK 1129 

                   aleaelaaheervdalnelgeqLiee....sghpdaeeIeerleelnerW
                    l +e+++++  v ++ +l++ L++++++   ++d +  +  + +l++rW
    KIAA0311  1130 SLCREIKQRRRGVASILRLCQHLLDDretcNLNADHQPMQLIIVNLERRW 1179 

                   eeLlelaeeRrqkLe<-*
                   e++  +a +++ +L+   
    KIAA0311  1180 EAIVMQAVQWQTRLQ    1194 

//