hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23130622/chunk_1/iprscan-20080501-23130622.nocrc
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Query sequence: KIAA0307
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TIGR00229   sensory_box: PAS domain S-box                20.1     0.0027   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TIGR00229     1/1     320   447 ..     1   130 []    20.1   0.0027

Alignments of top-scoring domains:
TIGR00229: domain 1 of 1, from 320 to 447: score 20.1, E = 0.0027
                   *->reseeryraifesspdaiivvdleGnilyvnpafeelfGysaeellG
                           +    +    + +  ++++G+i++v p+   + Gy +++llG
    KIAA0307   320    SSPVCMDMNGMSVPTEFLSRHNSDGIITFVDPRCISVIGYQPQDLLG 366  

                   rnvlelipeedreelrerierlletgerepvseerrvlgrrkdGseiwve
                   + +le+ ++ed  +lre ++++ +  ++++ s  +r+  r+k+  + w++
    KIAA0307   367 KDILEFCHPEDQSHLRESFQQVVK-LKGQVLSVMYRF--RTKN--REWML 411  

                   vsvspirdsn...ggvlgvlgivrDiterkeaeeal<-*
                   +++s+   +n+ + ++ +++++  ++ ++++ + +l   
    KIAA0307   412 IRTSSFTFQNpysDEIEYIICTNTNVKQLQQQQAEL    447  

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