hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23130622/chunk_1/iprscan-20080501-23130622.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0307 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08447.1.fs PAS fold 107.1 4.9e-29 2 PF00989.14.fs PAS fold 85.7 2.1e-25 2 PF08447.1.ls PAS fold 87.9 2.9e-23 1 PF00989.14.ls PAS fold 72.2 1.6e-18 2 PF00010.16.fs Helix-loop-helix DNA-binding domain 51.2 4.6e-13 1 PF00010.16.ls Helix-loop-helix DNA-binding domain 53.2 8e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00010.16.ls 1/1 63 116 .. 1 53 [] 53.2 8e-13 PF00010.16.fs 1/1 63 116 .. 1 53 [] 51.2 4.6e-13 PF00989.14.ls 1/2 136 243 .. 1 123 [] 67.7 3.4e-17 PF00989.14.fs 1/2 136 243 .. 1 123 [] 65.9 2.1e-19 PF08447.1.fs 1/2 159 198 .. 1 44 [. 21.2 3.4e-05 PF00989.14.ls 2/2 324 437 .. 1 123 [] 4.4 0.14 PF00989.14.fs 2/2 341 408 .. 19 96 .. 19.8 1.7e-05 PF08447.1.ls 1/1 346 440 .. 1 100 [] 87.9 2.9e-23 PF08447.1.fs 2/2 346 440 .. 1 100 [] 85.9 4.8e-23 Alignments of top-scoring domains: PF00010.16.ls: domain 1 of 1, from 63 to 116: score 53.2, E = 8e-13 *->rRrahnarERrRRdriNdafeeLrellPtla..pskKlsKaeiLrlA R++h+++ERr R+++ + + eL +++Pt ++ +K +K++iLr+A KIAA0307 63 SRENHSEIERRKRNKMTQYITELSDMVPT-CsaLARKPDKLTILRMA 108 veYIksLq<-* v+++ks++ KIAA0307 109 VSHMKSMR 116 PF00010.16.fs: domain 1 of 1, from 63 to 116: score 51.2, E = 4.6e-13 *->rRrahnarERrRRdriNdafeeLrellPtla..pskKlsKaeiLrlA R++h+++ERr R+++ + + eL +++Pt ++ +K +K++iLr+A KIAA0307 63 SRENHSEIERRKRNKMTQYITELSDMVPT-CsaLARKPDKLTILRMA 108 veYIksLq<-* v+++ks++ KIAA0307 109 VSHMKSMR 116 PF00989.14.ls: domain 1 of 2, from 136 to 243: score 67.7, E = 3.4e-17 *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks e+ + ile+ ++ + fvv e Gr+ yv+++ + l+++++e+ G + KIAA0307 136 ELKHLILEA-ADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGST 181 lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp l+++++++ ++e+l+++l + e++ ++++ + g++ KIAA0307 182 LYEQVHPD------DVEKLREQLCTSENsMTGRILDLK--------TGTV 217 ihvevraspvrdaggeilgflgvlrDi<-* + ++ s+++++g+++ f++++r+ KIAA0307 218 KKEGQQSSMRMCMGSRR-SFICRMRCG 243 PF00989.14.fs: domain 1 of 2, from 136 to 243: score 65.9, E = 2.1e-19 *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks e+ + ile+ ++ + fvv e Gr+ yv+++ + l+++++e+ G + KIAA0307 136 ELKHLILEA-ADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGST 181 lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp l+++++++ ++e+l+++l + e++ ++++ + g++ KIAA0307 182 LYEQVHPD------DVEKLREQLCTSENsMTGRILDLK--------TGTV 217 ihvevraspvrdaggeilgflgvlrDi<-* + ++ s+++++g+++ f++++r+ KIAA0307 218 KKEGQQSSMRMCMGSRR-SFICRMRCG 243 PF08447.1.fs: domain 1 of 2, from 159 to 198: score 21.2, E = 3.4e-05 *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervreal<-* +iy+s+++ +l + +e g + +++ vHPdD+e++re+l KIAA0307 159 VIYVSDSVTPVLNQPQSEWFGST----LYEQVHPDDVEKLREQL 198 PF00989.14.ls: domain 2 of 2, from 324 to 437: score 4.4, E = 0.14 *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks + + + +++ + dG+i++v + ++ G+++++++Gk KIAA0307 324 CMDMNGMSV-PTEFLSRHN-SDGIITFVDPRCISVIGYQPQDLLGKD 368 lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp +l++ ++ed++ ++e ++q+ + +++ +v +fr+ ++r+ KIAA0307 369 ILEFCHPEDQSH--LRESFQQVVKLKGQvLSVMYRFRT--------KNRE 408 ihvevraspvrd...aggeilgflgvlrDi<-* ++++r+s ++++++ ++ei +++++ + KIAA0307 409 -WMLIRTSSFTFqnpYSDEIEYIICTNTNV 437 PF00989.14.fs: domain 2 of 2, from 341 to 408: score 19.8, E = 1.7e-05 *->DvedGrilyvNaaaeellGlsreeviGkslldlipeeddaeclvael + dG+i++v + ++ G+++++++Gk +l++ ++ed++ ++e KIAA0307 341 N-SDGIITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSH--LRES 384 llqaleqgee.rgvevsfrvsgqrflvrdgrp<-* ++q+ + +++ +v +fr+ ++r+ KIAA0307 385 FQQVVKLKGQvLSVMYRFRT--------KNRE 408 PF08447.1.ls: domain 1 of 1, from 346 to 440: score 87.9, E = 2.9e-23 *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea i++++pr+ + GY+p++llgk+ +l+++HP+D+ ++re++q++ KIAA0307 346 ITFVDPRCISVIGYQPQDLLGKD----ILEFCHPEDQSHLRESFQQV 388 lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI +klk++ + s++yR+r+k+ e+ ++++ + +++ + ++ ++i++++++ KIAA0307 389 VKLKGQ-VLSVMYRFRTKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNV 437 Ter<-* + KIAA0307 438 KQL 440 PF08447.1.fs: domain 2 of 2, from 346 to 440: score 85.9, E = 4.8e-23 *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea i++++pr+ + GY+p++llgk+ +l+++HP+D+ ++re++q++ KIAA0307 346 ITFVDPRCISVIGYQPQDLLGKD----ILEFCHPEDQSHLRESFQQV 388 lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI +klk++ + s++yR+r+k+ e+ ++++ + +++ + ++ ++i++++++ KIAA0307 389 VKLKGQ-VLSVMYRFRTKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNV 437 Ter<-* + KIAA0307 438 KQL 440 //