hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23054441/chunk_1/iprscan-20080501-23054441.nocrc
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Query sequence: KIAA0303
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 344.3    8.1e-99   1
SM00228                                                  63.6    2.5e-14   1
SM00219                                                 -25.7    1.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00220    1/1      84   357 ..     1   231 []   344.3  8.1e-99
SM00219    1/1      84   357 ..     1   280 []   -25.7  1.5e-09
SM00228    1/1     663   743 ..     1    80 []    63.6  2.5e-14

Alignments of top-scoring domains:
SM00220: domain 1 of 1, from 84 to 357: score 344.3, E = 8.1e-99
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +e +k++  Ga+G Vy +r+k++ +++A+K+i++++   +++ +++ 
    KIAA0303    84    FETIKLISNGAYGAVYFVRHKESRQRFAMKKINkqnlilrnqiQQAF 130  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                    E++iL     P++V +y +fe++ +l++VmEy+eG  Gd  +l+k++g+
    KIAA0303   131 VERDILTFaENPFVVSMYCSFETrRHLCMVMEYVEG--GDCATLMKNMGP 178  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         l+ ++ar yf+++++aLeYLH+ gI+HRDLKP+N+L++s +h+K
    KIAA0303   179 ------LPVdMARMYFAETVLALEYLHNYGIVHRDLKPDNLLVTSmgHIK 222  

                   laDFGlArql......................ttfvGTpeYmAPEvl...
                   l+DFGl+++   + +++  +++ +++ ++  ++ ++GTpeY+APEv+ ++
    KIAA0303   223 LTDFGLSKVGlmsmttnlyeghiekdarefldKQVCGTPEYIAPEVIlrq 272  

                   gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig...........
                   gYgk +vD+W+ G+ilyE+l+G+ PF +++++++f ++ +++ +++++++
    KIAA0303   273 GYGK-PVDWWAMGIILYEFLVGCVPFFgdTPEELFGQVIsdeinwpekde 321  

                   ..SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                    ++p+a dLi  lL+ +P +Rl+ + a e    +k+H ff   
    KIAA0303   322 apPPDAQDLITLLLRQNPLERLGTgGAYE----VKQHRFF    357  

SM00219: domain 1 of 1, from 84 to 357: score -25.7, E = 1.5e-09
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                       + +k + +Ga+G Vy  + k++++  A K++++     +++++   
    KIAA0303    84    FETIKLISNGAYGAVYFVRHKesrQRFAMKKINKQNlilrnqIQQAF 130  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                    E  i++    ++p +V ++    +          l++vmEy+egGd+  
    KIAA0303   131 VERDILTFA--ENPFVVSMYCSFETR-------RHLCMVMEYVEGGDCAT 171  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                     ++ +p l+++    +        eYL+  ++vHRDL   N Lv++ ++
    KIAA0303   172 LMKNMGP-LPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLVTSMGH 220  

                   vKIsDFGLsRdlyddDkkG...eskdyYrkkggkggktllPi.rWmAPEs
                   +K +DFGLs+ +    ++ +  e +  +++++    k +   +   APE+
    KIAA0303   221 IKLTDFGLSKVGLMS-MTTnlyEGHIEKDARE-FLDKQVCGTpEYIAPEV 268  

                   lkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkG
                   +    +    D W+ G+ L+E +  + +   +      ++ee++ ++ + 
    KIAA0303   269 ILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD------TPEELFGQVISD 312  

                   yRlpkPendlpiSsvtCPdelYd.lMlqCWaedPedRPtFsel.....ve
                   +   + ++       ++P+   ++l++   + +P +R       + ++++
    KIAA0303   313 EINWPEKD-------EAPPPDAQdLITLLLRQNPLERLGTGGAyevkqHR 355  

                   rl<-*
                   ++   
    KIAA0303   356 FF    357  

SM00228: domain 1 of 1, from 663 to 743: score 63.6, E = 2.5e-14
                   *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk
                      + +Gf+i+  +   ++++  + +++v +v++GspA +aG      Lk
    KIAA0303   663    KNYGFTIRAirvyvgdsdiytvHHIVWNVEEGSPACQAG------LK 703  

                   vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +GD I+ +NG ++v gl h e+++ll k+g+     kv++t  + +   
    KIAA0303   704 AGDLITHING-EPVHGLVHTEVIELLLKSGN-----KVSITTTPFE    743  

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