hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23054441/chunk_1/iprscan-20080501-23054441.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0303 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 274.7 1.6e-79 1 PF00069.15.fs Protein kinase domain 272.8 6.1e-79 1 PF08926.1.fs Domain of unknown function (DUF1908) 115.4 1.5e-31 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 33.6 8.6e-09 1 PF07714.7.fs Protein tyrosine kinase 30.3 1e-08 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 32.8 1.1e-06 1 PF00433.14.fs Protein kinase C terminal domain 19.1 5.6e-05 1 PF00433.14.ls Protein kinase C terminal domain 21.1 0.0011 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08926.1.fs 1/1 1 46 [. 268 317 .] 115.4 1.5e-31 PF00069.15.fs 1/1 84 357 .. 1 287 [] 272.8 6.1e-79 PF00069.15.ls 1/1 84 357 .. 1 287 [] 274.7 1.6e-79 PF07714.7.fs 1/1 156 230 .. 81 161 .. 30.3 1e-08 PF00433.14.fs 1/1 375 421 .. 1 47 [] 19.1 5.6e-05 PF00433.14.ls 1/1 375 421 .. 1 47 [] 21.1 0.0011 PF00595.14.ls 1/1 654 740 .. 1 86 [] 32.8 1.1e-06 PF00595.14.fs 1/1 690 740 .. 33 86 .] 33.6 8.6e-09 Alignments of top-scoring domains: PF08926.1.fs: domain 1 of 1, from 1 to 46: score 115.4, E = 1.5e-31 *->EFDPeeFYhLLEaAEGvakegqGikTarvpDiPrYIIsqLGLtrDPL EFDPeeFY+LLEaAEG+akegqGikT DiPrYIIsqLGL++DPL KIAA0303 1 EFDPEEFYYLLEAAEGHAKEGQGIKT----DIPRYIISQLGLNKDPL 43 eem<-* eem KIAA0303 44 EEM 46 PF00069.15.fs: domain 1 of 1, from 84 to 357: score 272.8, E = 6.1e-79 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G Vy +hk +++++A+K+i+k++ + ++ ++a+ KIAA0303 84 FETIKLISNGAYGAVYFVRHKESRQRFAMKKINKQnLILRNQIQQAF 130 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls E il p++v ++++fe+++hl++V+Ey+egG d ++++ KIAA0303 131 V--ERDILTFAENPFVVSMYCSFETRRHLCMVMEYVEGG----DCATLMK 174 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng + gpl + d a++++ +++ +leYLH+ gi+HRDLKP+N+L+ + g KIAA0303 175 ---NMGPL--PVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLVTSMG 219 vvdaflKiaDFGlAkkls............t.sss.l..ttfvGTpwYmA ++ K++DFGl+k+ + +++ +++ ++ +++ ++ ++GTp+Y+A KIAA0303 220 HI----KLTDFGLSKVGLmsmttnlyeghiEkDAReFldKQVCGTPEYIA 265 PEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki PEv+l ++gyg++vD+W++G+ilye+l G PF g+ ++ +l+ ++ KIAA0303 266 PEVIL-RQGYGKPVDWWAMGIILYEFLVGCVPFFGD-----TPEELFGQV 309 lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt... + e+++pe+d+ + +++a+dLi+ +L+++P +Rl++++ KIAA0303 310 IS--DEINWPEKDE----------APPPDAQDLITLLLRQNPLERLGtgg 347 aeeilqHPwf<-* a e++qH +f KIAA0303 348 AYEVKQHRFF 357 PF00069.15.ls: domain 1 of 1, from 84 to 357: score 274.7, E = 1.6e-79 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G Vy +hk +++++A+K+i+k++ + ++ ++a+ KIAA0303 84 FETIKLISNGAYGAVYFVRHKESRQRFAMKKINKQnLILRNQIQQAF 130 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls E il p++v ++++fe+++hl++V+Ey+egG d ++++ KIAA0303 131 V--ERDILTFAENPFVVSMYCSFETRRHLCMVMEYVEGG----DCATLMK 174 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng + gpl + d a++++ +++ +leYLH+ gi+HRDLKP+N+L+ + g KIAA0303 175 ---NMGPL--PVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLVTSMG 219 vvdaflKiaDFGlAkkls............t.sss.l..ttfvGTpwYmA ++ K++DFGl+k+ + +++ +++ ++ +++ ++ ++GTp+Y+A KIAA0303 220 HI----KLTDFGLSKVGLmsmttnlyeghiEkDAReFldKQVCGTPEYIA 265 PEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki PEv+l ++gyg++vD+W++G+ilye+l G PF g+ ++ +l+ ++ KIAA0303 266 PEVIL-RQGYGKPVDWWAMGIILYEFLVGCVPFFGD-----TPEELFGQV 309 lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt... + e+++pe+d+ + +++a+dLi+ +L+++P +Rl++++ KIAA0303 310 IS--DEINWPEKDE----------APPPDAQDLITLLLRQNPLERLGtgg 347 aeeilqHPwf<-* a e++qH +f KIAA0303 348 AYEVKQHRFF 357 PF07714.7.fs: domain 1 of 1, from 156 to 230: score 30.3, E = 1e-08 *->ggpglyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMe + l++V+Ey+egGd + +++ +pL++ + + ++ ++e KIAA0303 156 H---LCMVMEYVEGGDCATLMKNM---GPLPVDMARMYFAETVLALE 196 YLesknfvHRDLAARNcLVsenlvVKIsDFGLaR<-* YL++ ++vHRDL N LV++ +++K +DFGL++ KIAA0303 197 YLHNYGIVHRDLKPDNLLVTSMGHIKLTDFGLSK 230 PF00433.14.fs: domain 1 of 1, from 375 to 421: score 19.1, E = 5.6e-05 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp +++s++DTs+FD+ +++++++t ++++ + + e r+F+ ++ KIAA0303 375 QLESEDDTSYFDTRSEKYHHMETE-EEDDtNDEDFNVEIRQFSSCSH 420 e<-* KIAA0303 421 R 421 PF00433.14.ls: domain 1 of 1, from 375 to 421: score 21.1, E = 0.0011 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp +++s++DTs+FD+ +++++++t ++++ + + e r+F+ ++ KIAA0303 375 QLESEDDTSYFDTRSEKYHHMETE-EEDDtNDEDFNVEIRQFSSCSH 420 e<-* KIAA0303 421 R 421 PF00595.14.ls: domain 1 of 1, from 654 to 740: score 32.8, E = 1.1e-06 *->evtlekedkrgglGfsikggsdkga.....dkgifvsevlpGsgaAe + ++ ++ ++ Gf+i+ ++++ + +v +v +Gs+a + KIAA0303 654 QPIVIHS-SGKNYGFTIRAIRVYVGdsdiyTVHHIVWNVEEGSPACQ 699 agGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ag L+aGD I+ +NG+++ +l h e++++l +sg+ +v++t KIAA0303 700 AG--LKAGDLITHINGEPVHGLVHTEVIELLLKSGN-KVSITTT 740 PF00595.14.fs: domain 1 of 1, from 690 to 740: score 33.6, E = 8.6e-09 *->evlpGsgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggs +v +Gs+a +ag L+aGD I+ +NG+++ +l h e++++l +sg+ KIAA0303 690 NVEEGSPACQAG--LKAGDLITHINGEPVHGLVHTEVIELLLKSGN- 733 evtLtvl<-* +v++t KIAA0303 734 KVSITTT 740 //