hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22482889/chunk_1/iprscan-20080501-22482889.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0294 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 216.9 1.8e-60 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00325 1/1 461 643 .. 1 211 [] 216.9 1.8e-60 Alignments of top-scoring domains: SM00325: domain 1 of 1, from 461 to 643: score 216.9, E = 1.8e-60 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl +l +++E+nYV+ Lk ++e + kpL++++ ++ls++++kt+ KIAA0294 461 ILGSVVDSEKNYVDALKRILEQYEKPLSEMEP----KVLSERKLKTV 503 FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv F+ ++ ei+++H+ F ++L rv+ew ds+e+igdv KIAA0294 504 FY-RVKEILQCHSLFQIALASRVSEW---------------DSVEMIGDV 537 FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk F+++fs++ +++YseY++n++ a+++lkk +++++paF +flk+ ++ KIAA0294 538 FVASFSKSMVLDAYSEYVNNFSTAVAVLKK--TCATKPAFLEFLKQEQEA 585 pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk ++ r tL sl++kP+QR+++ +LLL+++lk+t+++h+dr L++ KIAA0294 586 SPDR------TTLYSLMMKPIQRFPQFILLLQDMLKNTSKGHPDRLPLQM 629 AleaikelasqvNe<-* Al +++la+++Ne KIAA0294 630 ALTELETLAEKLNE 643 //