hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22482889/chunk_1/iprscan-20080501-22482889.nocrc
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Query sequence: KIAA0294
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                  122.0    7.3e-36   1
PF00621.11.ls RhoGEF domain                                  123.8    4.5e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     461   643 ..     1   207 []   122.0  7.3e-36
PF00621.11.ls   1/1     461   643 ..     1   207 []   123.8  4.5e-34

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 461 to 643: score 122.0, E = 7.3e-36
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      +l +++ +Ek+Yv+ L  ++  y kpL e  + + ++L+ ++++t+F
    KIAA0294   461    ILGSVVDSEKNYVDALKRILEQYEKPLSE--MEP-KVLSERKLKTVF 504  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel.
                     + +i++ h+ F + +L  r+s++           +s + +Gd+F ++ 
    KIAA0294   505 YRVKEILQCHSLFQI-ALASRVSEW-----------DSVEMIGDVFVASf 542  

                   .kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+  l+ Y eY++n+  A+ +l+k   +a+ p+F efl++ +  s  + 
    KIAA0294   543 sKSMVLDAYSEYVNNFSTAVAVLKK--TCATKPAFLEFLKQEQEASP-D- 588  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal
                        + tL sL++kP+qR +  +LLL++ Lk t+   +++++  L+ al
    KIAA0294   589 -----RTTLYSLMMKPIQRFPQFILLLQDMLKNTSK--GHPDRLPLQMAL 631  

                   dalqdlaksiNe<-*
                     l++la+ +Ne   
    KIAA0294   632 TELETLAEKLNE    643  

PF00621.11.ls: domain 1 of 1, from 461 to 643: score 123.8, E = 4.5e-34
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      +l +++ +Ek+Yv+ L  ++  y kpL e  + + ++L+ ++++t+F
    KIAA0294   461    ILGSVVDSEKNYVDALKRILEQYEKPLSE--MEP-KVLSERKLKTVF 504  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel.
                     + +i++ h+ F + +L  r+s++           +s + +Gd+F ++ 
    KIAA0294   505 YRVKEILQCHSLFQI-ALASRVSEW-----------DSVEMIGDVFVASf 542  

                   .kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +k+  l+ Y eY++n+  A+ +l+k   +a+ p+F efl++ +  s  + 
    KIAA0294   543 sKSMVLDAYSEYVNNFSTAVAVLKK--TCATKPAFLEFLKQEQEASP-D- 588  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal
                        + tL sL++kP+qR +  +LLL++ Lk t+   +++++  L+ al
    KIAA0294   589 -----RTTLYSLMMKPIQRFPQFILLLQDMLKNTSK--GHPDRLPLQMAL 631  

                   dalqdlaksiNe<-*
                     l++la+ +Ne   
    KIAA0294   632 TELETLAEKLNE    643  

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