hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22465188/chunk_1/iprscan-20080501-22465188.nocrc
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Query sequence: KIAA0293
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02376.6.ls CUT domain                                     506.1   3.8e-149   3
PF02376.6.fs CUT domain                                     503.3   2.6e-148   3
PF00046.19.ls Homeobox domain                                 61.3      3e-15   1
PF00046.19.fs Homeobox domain                                 59.3    1.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02376.6.fs   1/3     563   650 ..     1    88 []   159.7  2.6e-45
PF02376.6.ls   1/3     563   650 ..     1    88 []   161.7  1.7e-45
PF02376.6.ls   2/3     906   991 ..     1    88 []   166.0  8.6e-47
PF02376.6.fs   2/3     906   980 ..     1    75 [.   167.2  1.8e-47
PF02376.6.fs   3/3    1057  1144 ..     1    88 []   176.3  4.5e-50
PF02376.6.ls   3/3    1057  1144 ..     1    88 []   178.3  1.8e-50
PF00046.19.ls   1/1    1188  1244 ..     1    57 []    61.3    3e-15
PF00046.19.fs   1/1    1188  1244 ..     1    57 []    59.3  1.2e-14

Alignments of top-scoring domains:
PF02376.6.fs: domain 1 of 3, from 563 to 650: score 159.7, E = 2.6e-45
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      ++  ++ e ldTaeIa +Vke+L ++nI+Qr+F+++vLGlSQGs+S+
    KIAA0293   563    AGPGAEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSE 609  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +L+rPKPW klt+kG+epF++M+++L+d+++v +l+ +q +   
    KIAA0293   610 ILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRTIQVR    650  

PF02376.6.ls: domain 1 of 3, from 563 to 650: score 161.7, E = 1.7e-45
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      ++  ++ e ldTaeIa +Vke+L ++nI+Qr+F+++vLGlSQGs+S+
    KIAA0293   563    AGPGAEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSE 609  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +L+rPKPW klt+kG+epF++M+++L+d+++v +l+ +q +   
    KIAA0293   610 ILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRTIQVR    650  

PF02376.6.ls: domain 2 of 3, from 906 to 991: score 166.0, E = 8.6e-47
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      +++ +m+ e+dT e++r+Vke+L++++I+Qr+F+ekvLGlSQGs+Sd
    KIAA0293   906    QYELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSD 952  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +L+rPKPWskltqkGRepF+rMq+WL+d  ++  ++ qq+    
    KIAA0293   953 MLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQ--AVGQQPG    991  

PF02376.6.fs: domain 2 of 3, from 906 to 980: score 167.2, E = 1.8e-47
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      +++ +m+ e+dT e++r+Vke+L++++I+Qr+F+ekvLGlSQGs+Sd
    KIAA0293   906    QYELYMYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSD 952  

                   LLrrPKPWskltqkGRepFrrMqnWLqd<-*
                   +L+rPKPWskltqkGRepF+rMq+WL+d   
    KIAA0293   953 MLSRPKPWSKLTQKGREPFIRMQLWLSD    980  

PF02376.6.fs: domain 3 of 3, from 1057 to 1144: score 176.3, E = 4.5e-50
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      ++ v+m++eldT++I++rVke+L+++n++QrlF+e++LGl+QGs+Sd
    KIAA0293  1057    QEIVAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSD 1103 

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   LL+rPKPW+kl+ kGRepF+rMq+WL+dp +v++l+++++    
    KIAA0293  1104 LLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLRDMKKL    1144 

PF02376.6.ls: domain 3 of 3, from 1057 to 1144: score 178.3, E = 1.8e-50
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      ++ v+m++eldT++I++rVke+L+++n++QrlF+e++LGl+QGs+Sd
    KIAA0293  1057    QEIVAMSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSD 1103 

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   LL+rPKPW+kl+ kGRepF+rMq+WL+dp +v++l+++++    
    KIAA0293  1104 LLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLRDMKKL    1144 

PF00046.19.ls: domain 1 of 1, from 1188 to 1244: score 61.3, E = 3e-15
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      +++R++  pe  e+L k++q  +YPs +++e L+ +L+L    V +W
    KIAA0293  1188    KKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINW 1234 

                   FQNRRaKwKk<-*
                   F+N R ++++   
    KIAA0293  1235 FHNYRSRMRR    1244 

PF00046.19.fs: domain 1 of 1, from 1188 to 1244: score 59.3, E = 1.2e-14
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      +++R++  pe  e+L k++q  +YPs +++e L+ +L+L    V +W
    KIAA0293  1188    KKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINW 1234 

                   FQNRRaKwKk<-*
                   F+N R ++++   
    KIAA0293  1235 FHNYRSRMRR    1244 

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