hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22300098/chunk_1/iprscan-20080501-22300098.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0284 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00498.16.fs FHA domain 46.8 3.2e-13 1 PF00498.16.ls FHA domain 48.5 2.1e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00498.16.fs 1/1 42 109 .. 1 94 [] 46.8 3.2e-13 PF00498.16.ls 1/1 42 109 .. 1 94 [] 48.5 2.1e-11 Alignments of top-scoring domains: PF00498.16.fs: domain 1 of 1, from 42 to 109: score 46.8, E = 3.2e-13 *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr + +GR ++ l ++ + ++Ha+i y+ ++++ KIAA0284 42 IFVGR-EECELMLQSRS--------VDKQHAVINYDQDRDEH----- 74 paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-* ++Dl+s+n G tfvN+ r++ + v Lk +dvir+G KIAA0284 75 ---------WVKDLGSLN--G-TFVNDMRIPDQKYVTLKLNDVIRFG 109 PF00498.16.ls: domain 1 of 1, from 42 to 109: score 48.5, E = 2.1e-11 *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr + +GR ++ l ++ + ++Ha+i y+ ++++ KIAA0284 42 IFVGR-EECELMLQSRS--------VDKQHAVINYDQDRDEH----- 74 paqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-* ++Dl+s+n G tfvN+ r++ + v Lk +dvir+G KIAA0284 75 ---------WVKDLGSLN--G-TFVNDMRIPDQKYVTLKLNDVIRFG 109 //