# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha06725.fasta.huge -Q ../query/KIAA0281.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0281, 271 aa
 vs ./tmplib.23147 library

1987234 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.8956+/-0.0049; mu= 12.8467+/- 0.334
 mean_var=92.4977+/-21.578, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.133355

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1834  ( 725 res)   fh02469(revised)            ( 725) 1348 269.1   4e-73


>>KIAA1834  ( 725 res)   fh02469(revised)                 (725 aa)
 initn: 1341 init1: 1341 opt: 1348  Z-score: 1404.7  bits: 269.1 E(): 4e-73
Smith-Waterman score: 1348;  74.242% identity (90.909% similar) in 264 aa overlap (5-268:465-722)

                                         10        20        30    
KIAA02                           VALWWQQLRISICGWERWTYGSLVMQVVKEQVMR
                                     :...: .   ...      :::::.::. :
KIAA18 GRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNK------VMQVVREQITR
          440       450       460       470             480        

           40        50        60        70        80        90    
KIAA02 ALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEKIQPEILELIKQ
       :: .::.:::::::::..:::.:::..::::::.:.:::: ::.::.:::::::::::::
KIAA18 ALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQDDFQSPPIVELREKIQPEILELIKQ
      490       500       510       520       530       540        

          100       110       120       130       140       150    
KIAA02 QRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPV
       :::::: ::. :::.. ::::..::::::. ::::::::::...:::::  .:::.:.::
KIAA18 QRLNRLCEGSSFRKIGNRRRQERFWYCRLALNHKVLHYGDLDDNPQGEVTFESLQEKIPV
      550       560       570       580       590       600        

          160       170       180       190       200       210    
KIAA02 ADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLN
       :::::.::::::::::::.:::::::::::::::::: .  ::::::.:.::::: :::.
KIAA18 ADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPDETLNFIAPNKYEYCIWIDGLS
      610       620       630       640       650       660        

          220       230       240       250       260       270 
KIAA02 ALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDAPPPIPKEPSNYDFVYDCN
       ::::::: :.::..:::::::::.:::::::::::::.::::::::::.:::::   
KIAA18 ALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEAPPPIPKEPSSYDFVYHYG
      670       680       690       700       710       720     




271 residues in 1 query   sequences
1987234 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:27 2008 done: Thu Dec 18 15:14:28 2008
 Total Scan time:  0.310 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]