hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21483304/chunk_1/iprscan-20080501-21483304.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0259 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00292 423.0 1.7e-122 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00292 1/7 131 207 .. 1 93 [] 62.2 6.4e-14 SM00292 2/7 225 302 .. 1 93 [] 86.0 4.6e-21 SM00292 3/7 384 462 .. 1 93 [] 68.1 1.1e-15 SM00292 4/7 578 651 .. 1 93 [] 34.2 1.7e-05 SM00292 5/7 671 756 .. 1 93 [] 55.5 7.1e-12 SM00292 6/7 930 1009 .. 1 93 [] 61.7 9.5e-14 SM00292 7/7 1290 1369 .. 1 93 [] 55.3 7.9e-12 Alignments of top-scoring domains: SM00292: domain 1 of 7, from 131 to 207: score 62.2, E = 6.4e-14 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk +++++t+++t+ +++e+r+e++++++++GG+v ++ KIAA0259 131 NMVMSDVTISCTS------LEkEkREEVHKYVQMMGGRVYrD----- 166 l.pttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkk l+ ++th+i+++ + kk+ a l++pi+ ++W++ +++k KIAA0259 167 LnVSVTHLIAgEVGSKKYL----------VAANLKKPILLPSWIKTLWEK 206 g<-* KIAA0259 207 S 207 SM00292: domain 2 of 7, from 225 to 302: score 86.0, E = 4.6e-21 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++f g+ +++tG +++ +r+e++ l +++GG +++++ + KIAA0259 225 CPIFLGCIICVTG------LCgLdRKEVQQLTVKHGGQYMgQLKMN- 264 lpttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkkg ++th+iv++p g+k+e +a+++++++Vt +W++d+++kg KIAA0259 265 --ECTHLIVqEPKGQKYE----------CAKRWNVHCVTTQWFFDSIEKG 302 <-* KIAA0259 - - SM00292: domain 3 of 7, from 384 to 462: score 68.1, E = 1.1e-15 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++l++g++++l+G f++ ++d+l++li + GG +++++ KIAA0259 384 EDLLDGCRIYLCG------FSgRkLDKLRRLINSGGGVRFnQLNE-- 422 lpttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldclkk ++thviv++ +++ + ++ + a++ ++V Wll+c+ k KIAA0259 423 --DVTHVIVgDYDDE---------LkQFWNKSAHRPHVVGAKWLLECFSK 461 g<-* g KIAA0259 462 G 462 SM00292: domain 4 of 7, from 578 to 651: score 34.2, E = 1.7e-05 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++lf+ ++f + G f++e+ + + ++i+++ Gk+++ +sr KIAA0259 578 EGLFSQKSFLVLG------FSnEnESNIANIIKENAGKIMsLLSR-- 616 lpttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkkg t+ v g+++e a +Vt Wl+ c++++ KIAA0259 617 --TVADYAVvPLLGCEVE-------------ATVGEVVTNTWLVTCIDYQ 651 <-* KIAA0259 - - SM00292: domain 5 of 7, from 671 to 756: score 55.5, E = 7.1e-12 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrk. + ++++++++++ ++ + +++ l++l+ lG+ v +++ rk+ KIAA0259 671 MTPLEDCVISFS------QCAgAeKESLTFLANLLGASVQeYFVRKs 711 ...kl.pttthviv.spegkkletdnrsstkllkaialgipiVteeWlld + +k + th+i ++ +g+k+e +a+++++p Vt+ Wll+ KIAA0259 712 nakKGmFASTHLILkERGGSKYE----------AAKKWNLPAVTIAWLLE 751 clkkg<-* ++g KIAA0259 752 TARTG 756 SM00292: domain 6 of 7, from 930 to 1009: score 61.7, E = 9.5e-14 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk +k+++ ++++++ k +++ +el ++ +lG+++ s+++ KIAA0259 930 PKPLHKVVVCVS------KKLsKkQSELNGIAASLGADYRwSFDE-- 968 lpttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldclkk t+th+i++ ++ +++++ +++g++iV+e+Wlldc ++ KIAA0259 969 --TVTHFIYqGRPNDT--------NrEYKSVKERGVHIVSEHWLLDCAQE 1008 g<-* + KIAA0259 1009 C 1009 SM00292: domain 7 of 7, from 1290 to 1369: score 55.3, E = 7.9e-12 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++l k f l++ +++++r ++ lie+lGG v+++++ KIAA0259 1290 EELKKQYIFQLSS------LNpQeRIDYCHLIEKLGGLVIeKQC--- 1327 l.pttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldclk ++pt+th++v+ p ++k+l+ +a g+++++ ++l++c KIAA0259 1328 FdPTCTHIVVgHPLR----------NeKYLASVAAGKWVLHRSYLEACRT 1367 kg<-* +g KIAA0259 1368 AG 1369 //