hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21483304/chunk_1/iprscan-20080501-21483304.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0259 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00533.16.ls BRCA1 C Terminus (BRCT) domain 417.3 2e-122 7 PF00533.16.fs BRCA1 C Terminus (BRCT) domain 404.7 1.2e-118 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00533.16.fs 1/7 129 204 .. 1 96 [] 65.4 2.3e-18 PF00533.16.ls 1/7 129 204 .. 1 96 [] 67.2 4.9e-17 PF00533.16.ls 2/7 223 299 .. 1 96 [] 83.2 7.7e-22 PF00533.16.fs 2/7 223 299 .. 1 96 [] 81.4 5.6e-23 PF00533.16.ls 3/7 382 459 .. 1 96 [] 66.3 9e-17 PF00533.16.fs 3/7 382 459 .. 1 96 [] 64.5 4.3e-18 PF00533.16.ls 4/7 576 648 .. 1 96 [] 30.4 5.7e-06 PF00533.16.fs 4/7 576 648 .. 1 96 [] 28.7 1e-07 PF00533.16.ls 5/7 669 753 .. 1 96 [] 51.4 2.9e-12 PF00533.16.fs 5/7 669 753 .. 1 96 [] 49.6 9.1e-14 PF00533.16.fs 6/7 928 1006 .. 1 96 [] 60.5 6e-17 PF00533.16.ls 6/7 928 1006 .. 1 96 [] 62.4 1.4e-15 PF00533.16.fs 7/7 1288 1366 .. 1 96 [] 54.6 3.1e-15 PF00533.16.ls 7/7 1288 1366 .. 1 96 [] 56.4 8.6e-14 Alignments of top-scoring domains: PF00533.16.fs: domain 1 of 7, from 129 to 204: score 65.4, E = 2.3e-18 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt + +++++t+++ ++l++++ree+ +++++++GG+v+ +l+ ++t KIAA0259 129 VyNMVMSDVTISC-TSLEKEKREEV--HKYVQMMGGRVYRDLNVSVT 172 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci h+i +ge g++k +l a +l++pi+ ++W++ ++ KIAA0259 173 HLI--AGEV---------------GSKK-YLVAANLKKPILLPSWIKTLW 204 <-* KIAA0259 - - PF00533.16.ls: domain 1 of 7, from 129 to 204: score 67.2, E = 4.9e-17 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt + +++++t+++ ++l++++ree+ +++++++GG+v+ +l+ ++t KIAA0259 129 VyNMVMSDVTISC-TSLEKEKREEV--HKYVQMMGGRVYRDLNVSVT 172 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci h+i +ge g++k +l a +l++pi+ ++W++ ++ KIAA0259 173 HLI--AGEV---------------GSKK-YLVAANLKKPILLPSWIKTLW 204 <-* KIAA0259 - - PF00533.16.ls: domain 2 of 7, from 223 to 299: score 83.2, E = 7.7e-22 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtssl.skkt +++++f g+++++ +gl+g++r+e+ ++l +k+GG ++++l++ ++ KIAA0259 223 FkCPIFLGCIICV-TGLCGLDRKEV--QQLTVKHGGQYMGQLkMNEC 266 thvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldc th+i v+ep +g +k ++ ak++++++vt +W++d+ KIAA0259 267 THLI--VQEP--------------KG-QK-YECAKRWNVHCVTTQWFFDS 298 i<-* i KIAA0259 299 I 299 PF00533.16.fs: domain 2 of 7, from 223 to 299: score 81.4, E = 5.6e-23 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtssl.skkt +++++f g+++++ +gl+g++r+e+ ++l +k+GG ++++l++ ++ KIAA0259 223 FkCPIFLGCIICV-TGLCGLDRKEV--QQLTVKHGGQYMGQLkMNEC 266 thvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldc th+i v+ep +g +k ++ ak++++++vt +W++d+ KIAA0259 267 THLI--VQEP--------------KG-QK-YECAKRWNVHCVTTQWFFDS 298 i<-* i KIAA0259 299 I 299 PF00533.16.ls: domain 3 of 7, from 382 to 459: score 66.3, E = 9e-17 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt +e+l+ g+++++ +g++g + ++l ++li++ GG +++l++++t KIAA0259 382 ApEDLLDGCRIYL-CGFSGRKLDKL--RRLINSGGGVRFNQLNEDVT 425 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci hvi vg+ +++++ ++ + a++ ++v Wll+c+ KIAA0259 426 HVI--VGDY-------------DDELKQ-FWNKSAHRPHVVGAKWLLECF 459 <-* KIAA0259 - - PF00533.16.fs: domain 3 of 7, from 382 to 459: score 64.5, E = 4.3e-18 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt +e+l+ g+++++ +g++g + ++l ++li++ GG +++l++++t KIAA0259 382 ApEDLLDGCRIYL-CGFSGRKLDKL--RRLINSGGGVRFNQLNEDVT 425 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci hvi vg+ +++++ ++ + a++ ++v Wll+c+ KIAA0259 426 HVI--VGDY-------------DDELKQ-FWNKSAHRPHVVGAKWLLECF 459 <-* KIAA0259 - - PF00533.16.ls: domain 4 of 7, from 576 to 648: score 30.4, E = 5.7e-06 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt +e lf++++f + g+++++ + + ++i+++ Gk++s ls+++ KIAA0259 576 TeEGLFSQKSFLV-LGFSNENESNI--ANIIKENAGKIMSLLSRTVA 619 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci v g++ a ++vt Wl+ ci KIAA0259 620 DYA--VVPL--------------LGCEV-----EATVGEVVTNTWLVTCI 648 <-* KIAA0259 - - PF00533.16.fs: domain 4 of 7, from 576 to 648: score 28.7, E = 1e-07 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt +e lf++++f + g+++++ + + ++i+++ Gk++s ls+++ KIAA0259 576 TeEGLFSQKSFLV-LGFSNENESNI--ANIIKENAGKIMSLLSRTVA 619 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci v g++ a ++vt Wl+ ci KIAA0259 620 DYA--VVPL--------------LGCEV-----EATVGEVVTNTWLVTCI 648 <-* KIAA0259 - - PF00533.16.ls: domain 5 of 7, from 669 to 753: score 51.4, E = 2.9e-12 *->p.eklfkgltfvitggldgfereeleleelieklGGkv......... ++++++++++++ + g e+e l +l+++lG++v++ ++++ KIAA0259 669 TgMTPLEDCVISF-SQCAGAEKESL--TFLANLLGASVqeyfvrksn 712 tsslskktthvislvgepkypkieiifigsleagtskkllkakalgipiv + + th+i +e g+sk +++ak++++p v KIAA0259 713 AKKGMFASTHLI--LKER---------------GGSK-YEAAKKWNLPAV 744 teeWlldci<-* t+ Wll+ KIAA0259 745 TIAWLLETA 753 PF00533.16.fs: domain 5 of 7, from 669 to 753: score 49.6, E = 9.1e-14 *->p.eklfkgltfvitggldgfereeleleelieklGGkv......... ++++++++++++ + g e+e l +l+++lG++v++ ++++ KIAA0259 669 TgMTPLEDCVISF-SQCAGAEKESL--TFLANLLGASVqeyfvrksn 712 tsslskktthvislvgepkypkieiifigsleagtskkllkakalgipiv + + th+i +e g+sk +++ak++++p v KIAA0259 713 AKKGMFASTHLI--LKER---------------GGSK-YEAAKKWNLPAV 744 teeWlldci<-* t+ Wll+ KIAA0259 745 TIAWLLETA 753 PF00533.16.fs: domain 6 of 7, from 928 to 1006: score 60.5, E = 6e-17 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt + +k+++++++++ +++ + +++el ++ +lG+ + s+++++t KIAA0259 928 EaPKPLHKVVVCV-SKKLSKKQSEL--NGIAASLGADYRWSFDETVT 971 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci h+i + g+p ++++++ ++ k++g++iv+e Wlldc KIAA0259 972 HFI-YQGRP-------------NDTNRE-YKSVKERGVHIVSEHWLLDCA 1006 <-* KIAA0259 - - PF00533.16.ls: domain 6 of 7, from 928 to 1006: score 62.4, E = 1.4e-15 *->p.eklfkgltfvitggldgfereeleleelieklGGkvtsslskktt + +k+++++++++ +++ + +++el ++ +lG+ + s+++++t KIAA0259 928 EaPKPLHKVVVCV-SKKLSKKQSEL--NGIAASLGADYRWSFDETVT 971 hvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldci h+i + g+p ++++++ ++ k++g++iv+e Wlldc KIAA0259 972 HFI-YQGRP-------------NDTNRE-YKSVKERGVHIVSEHWLLDCA 1006 <-* KIAA0259 - - PF00533.16.fs: domain 7 of 7, from 1288 to 1366: score 54.6, E = 3.1e-15 *->p.eklfkgltfvitggldgfereeleleelieklGGkv..tsslskk +e l k+++f + ++l+ +er ++ lieklGG v + ++++++ KIAA0259 1288 ThEELKKQYIFQL-SSLNPQERIDY--CHLIEKLGGLVieKQCFDPT 1331 tthvislvgepkypkieiifigsleagtskkllkakalgipivteeWlld +th++ vg+p +++k +l+ a g+++++ ++l + KIAA0259 1332 CTHIV--VGHP--------------LRNEK-YLASVAAGKWVLHRSYLEA 1364 ci<-* c KIAA0259 1365 CR 1366 PF00533.16.ls: domain 7 of 7, from 1288 to 1366: score 56.4, E = 8.6e-14 *->p.eklfkgltfvitggldgfereeleleelieklGGkv..tsslskk +e l k+++f + ++l+ +er ++ lieklGG v + ++++++ KIAA0259 1288 ThEELKKQYIFQL-SSLNPQERIDY--CHLIEKLGGLVieKQCFDPT 1331 tthvislvgepkypkieiifigsleagtskkllkakalgipivteeWlld +th++ vg+p +++k +l+ a g+++++ ++l + KIAA0259 1332 CTHIV--VGHP--------------LRNEK-YLASVAAGKWVLHRSYLEA 1364 ci<-* c KIAA0259 1365 CR 1366 //