hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21370195/chunk_1/iprscan-20080501-21370195.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0252
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03126.8.ls Plus-3 domain                                  207.3    3.4e-59   1
PF03126.8.fs Plus-3 domain                                  205.4    1.3e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03126.8.fs   1/1     349   454 ..     1   114 []   205.4  1.3e-58
PF03126.8.ls   1/1     349   454 ..     1   114 []   207.3  3.4e-59

Alignments of top-scoring domains:
PF03126.8.fs: domain 1 of 1, from 349 to 454: score 205.4, E = 1.3e-58
                   *->ddlnllrLsRskveellkdpptFeskVvGcFVRikiGpndygRlgkp
                      ++ln++rLsR+k+e+++++ p+F ++V+GcFVRi+iG+++    +kp
    KIAA0252   349    EELNRVRLSRHKLERWCHM-PFFAKTVTGCFVRIGIGNHN----SKP 390  

                   iYRlvqVtGvDkeadskrYslggktTnkyLevlngdservdfsisflSnq
                   +YR++++tGv +e++ k+Y+lgg++Tnk+L++++g+++rv f+++f+Snq
    KIAA0252   391 VYRVAEITGV-VETA-KVYQLGGTRTNKGLQLRHGNDQRV-FRLEFVSNQ 437  

                   dFtEeEfkrWkqkikng<-*
                   +FtE Ef++Wk++++     
    KIAA0252   438 EFTESEFMKWKEAMFSA    454  

PF03126.8.ls: domain 1 of 1, from 349 to 454: score 207.3, E = 3.4e-59
                   *->ddlnllrLsRskveellkdpptFeskVvGcFVRikiGpndygRlgkp
                      ++ln++rLsR+k+e+++++ p+F ++V+GcFVRi+iG+++    +kp
    KIAA0252   349    EELNRVRLSRHKLERWCHM-PFFAKTVTGCFVRIGIGNHN----SKP 390  

                   iYRlvqVtGvDkeadskrYslggktTnkyLevlngdservdfsisflSnq
                   +YR++++tGv +e++ k+Y+lgg++Tnk+L++++g+++rv f+++f+Snq
    KIAA0252   391 VYRVAEITGV-VETA-KVYQLGGTRTNKGLQLRHGNDQRV-FRLEFVSNQ 437  

                   dFtEeEfkrWkqkikng<-*
                   +FtE Ef++Wk++++     
    KIAA0252   438 EFTESEFMKWKEAMFSA    454  

//