# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha07048s1.fasta.nr -Q ../query/KIAA0252.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0252, 702 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7811794 sequences Expectation_n fit: rho(ln(x))= 6.5153+/-0.00021; mu= 7.1104+/- 0.012 mean_var=160.9677+/-30.799, 0's: 33 Z-trim: 100 B-trim: 248 in 2/65 Lambda= 0.101089 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|195976782|ref|NP_055953.3| Paf1/RNA polymerase ( 710) 4494 667.9 3.4e-189 gi|109080731|ref|XP_001100507.1| PREDICTED: simila ( 711) 4487 666.9 7e-189 gi|73999803|ref|XP_544630.2| PREDICTED: similar to ( 714) 4459 662.8 1.2e-187 gi|123858363|emb|CAM18078.1| Rtf1 Paf1/RNA polymer ( 715) 4418 656.8 7.5e-186 gi|118595726|sp|Q92541.3|RTF1_HUMAN RecName: Full= ( 670) 4289 638.0 3.3e-180 gi|194670665|ref|XP_596446.3| PREDICTED: Rtf1, Paf ( 670) 4263 634.2 4.6e-179 gi|149692456|ref|XP_001500906.1| PREDICTED: simila ( 696) 4104 611.0 4.5e-172 gi|75041873|sp|Q5RAD5.1|RTF1_PONAB RecName: Full=R ( 630) 4021 598.9 1.8e-168 gi|15929205|gb|AAH15052.1| Rtf1, Paf1/RNA polymera ( 585) 3746 558.7 2.1e-156 gi|73999805|ref|XP_858512.1| PREDICTED: similar to ( 585) 3736 557.3 5.7e-156 gi|115529001|gb|AAI17849.1| Rtf1 protein [Mus musc ( 585) 3716 554.3 4.3e-155 gi|53131208|emb|CAG31800.1| hypothetical protein [ ( 585) 3639 543.1 1e-151 gi|220678363|emb|CAX13148.1| Rtf1, Paf1/RNA polyme ( 700) 3616 539.8 1.2e-150 gi|126635343|dbj|BAF48399.1| RNA polymerase-associ ( 681) 3598 537.2 7.2e-150 gi|47221320|emb|CAG13256.1| unnamed protein produc ( 675) 3494 522.0 2.7e-145 gi|49899962|gb|AAH76973.1| MGC89486 protein [Xenop ( 590) 3410 509.7 1.2e-141 gi|148696021|gb|EDL27968.1| mCG9728 [Mus musculus] ( 633) 2938 440.9 6.5e-121 gi|119612896|gb|EAW92490.1| Rtf1, Paf1/RNA polymer ( 429) 2778 417.4 5.3e-114 gi|149023028|gb|EDL79922.1| Rtf1, Paf1/RNA polymer ( 429) 2756 414.2 4.9e-113 gi|74187158|dbj|BAE22595.1| unnamed protein produc ( 391) 2410 363.7 7.2e-98 gi|210109971|gb|EEA57828.1| hypothetical protein B ( 572) 1900 289.5 2.3e-75 gi|212508570|gb|EEB12218.1| RNA polymerase-associa ( 674) 1570 241.4 7.8e-61 gi|198432578|ref|XP_002121462.1| PREDICTED: simila ( 648) 1554 239.1 3.8e-60 gi|156223270|gb|EDO44107.1| predicted protein [Nem ( 532) 1500 231.1 7.9e-58 gi|221120087|ref|XP_002159856.1| PREDICTED: hypoth ( 682) 1455 224.7 8.8e-56 gi|89268874|emb|CAJ81472.1| novel protein [Xenopus ( 256) 1350 208.9 1.9e-51 gi|119612897|gb|EAW92491.1| Rtf1, Paf1/RNA polymer ( 412) 1335 206.9 1.2e-50 gi|189235165|ref|XP_968097.2| PREDICTED: similar t ( 650) 1325 205.7 4.3e-50 gi|110751156|ref|XP_001121513.1| PREDICTED: simila ( 692) 1303 202.5 4.2e-49 gi|156542925|ref|XP_001601558.1| PREDICTED: simila ( 639) 1242 193.6 1.9e-46 gi|194157356|gb|EDW72257.1| GK20812 [Drosophila wi ( 831) 1232 192.2 6.2e-46 gi|28913435|gb|AAH48535.1| Rtf1 protein [Mus muscu ( 201) 1218 189.5 1e-45 gi|158455054|gb|AAI08216.2| RTF1 protein [Bos taur ( 196) 1216 189.2 1.2e-45 gi|193657299|ref|XP_001943293.1| PREDICTED: simila ( 636) 1184 185.1 6.6e-44 gi|72010089|ref|XP_786848.1| PREDICTED: similar to ( 690) 1173 183.5 2.1e-43 gi|33416915|gb|AAH55619.1| Rtf1 protein [Danio rer ( 306) 1167 182.3 2.3e-43 gi|133737004|gb|AAI33778.1| LOC100049127 protein [ ( 207) 1122 175.5 1.7e-41 gi|190658378|gb|EDV55591.1| GG22183 [Drosophila er ( 776) 1116 175.3 7.3e-41 gi|194178512|gb|EDW92123.1| GE14177 [Drosophila ya ( 776) 1115 175.1 8.1e-41 gi|74872306|sp|Q9W261.1|RTF1_DROME RecName: Full=R ( 775) 1106 173.8 2e-40 gi|162944900|gb|ABY20519.1| LP07508p [Drosophila m ( 785) 1106 173.8 2e-40 gi|194194617|gb|EDX08193.1| GD11662 [Drosophila si ( 775) 1098 172.7 4.5e-40 gi|194135245|gb|EDW56761.1| GM15903 [Drosophila se ( 775) 1098 172.7 4.5e-40 gi|193902425|gb|EDW01292.1| GH21360 [Drosophila gr ( 796) 1094 172.1 6.9e-40 gi|190621043|gb|EDV36567.1| GF11885 [Drosophila an ( 781) 1085 170.8 1.7e-39 gi|54636827|gb|EAL26230.1| GA10665 [Drosophila pse ( 764) 1081 170.2 2.5e-39 gi|194113924|gb|EDW35967.1| GL17538 [Drosophila pe ( 764) 1073 169.0 5.6e-39 gi|210120603|gb|EEA68321.1| hypothetical protein B ( 605) 1068 168.2 7.9e-39 gi|157013231|gb|EAA00301.5| AGAP012057-PA [Anophel ( 808) 1062 167.4 1.8e-38 gi|167863854|gb|EDS27237.1| conserved hypothetical ( 811) 1059 167.0 2.4e-38 >>gi|195976782|ref|NP_055953.3| Paf1/RNA polymerase II c (710 aa) initn: 4494 init1: 4494 opt: 4494 Z-score: 3552.8 bits: 667.9 E(): 3.4e-189 Smith-Waterman score: 4494; 100.000% identity (100.000% similar) in 702 aa overlap (1-702:9-710) 10 20 30 40 50 KIAA02 RAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGS :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 MRGRLCVGRAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGS 10 20 30 40 50 60 60 70 80 90 100 110 KIAA02 DENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 DENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA02 EKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 EKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHD 130 140 150 160 170 180 180 190 200 210 220 230 KIAA02 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKK 190 200 210 220 230 240 240 250 260 270 280 290 KIAA02 KKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 KKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELL 250 260 270 280 290 300 300 310 320 330 340 350 KIAA02 AKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 AKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELN 310 320 330 340 350 360 360 370 380 390 400 410 KIAA02 RVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 RVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGT 370 380 390 400 410 420 420 430 440 450 460 470 KIAA02 RTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 RTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIK 430 440 450 460 470 480 480 490 500 510 520 530 KIAA02 EALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 EALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLN 490 500 510 520 530 540 540 550 560 570 580 590 KIAA02 ELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 ELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCK 550 560 570 580 590 600 600 610 620 630 640 650 KIAA02 PTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 PTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFK 610 620 630 640 650 660 660 670 680 690 700 KIAA02 VHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI :::::::::::::::::::::::::::::::::::::::::::::::::: gi|195 VHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 670 680 690 700 710 >>gi|109080731|ref|XP_001100507.1| PREDICTED: similar to (711 aa) initn: 4487 init1: 4487 opt: 4487 Z-score: 3547.3 bits: 666.9 E(): 7e-189 Smith-Waterman score: 4487; 100.000% identity (100.000% similar) in 701 aa overlap (2-702:11-711) 10 20 30 40 50 KIAA02 RAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MRGRLCVGRAAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSG 10 20 30 40 50 60 60 70 80 90 100 110 KIAA02 SDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARK 70 80 90 100 110 120 120 130 140 150 160 170 KIAA02 IEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFH 130 140 150 160 170 180 180 190 200 210 220 230 KIAA02 DGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEK 190 200 210 220 230 240 240 250 260 270 280 290 KIAA02 KKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAEL 250 260 270 280 290 300 300 310 320 330 340 350 KIAA02 LAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEEL 310 320 330 340 350 360 360 370 380 390 400 410 KIAA02 NRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGG 370 380 390 400 410 420 420 430 440 450 460 470 KIAA02 TRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSI 430 440 450 460 470 480 480 490 500 510 520 530 KIAA02 KEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQL 490 500 510 520 530 540 540 550 560 570 580 590 KIAA02 NELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQC 550 560 570 580 590 600 600 610 620 630 640 650 KIAA02 KPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLF 610 620 630 640 650 660 660 670 680 690 700 KIAA02 KVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 670 680 690 700 710 >>gi|73999803|ref|XP_544630.2| PREDICTED: similar to Paf (714 aa) initn: 4459 init1: 4459 opt: 4459 Z-score: 3525.2 bits: 662.8 E(): 1.2e-187 Smith-Waterman score: 4459; 99.287% identity (99.857% similar) in 701 aa overlap (2-702:14-714) 10 20 30 40 KIAA02 RAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTE :::::::::::::::::::::: :::::::::::::::::::::::: gi|739 MRGRLCVGRAAAAAAAAAAAVAVPLAGGQEGSPGGVRRGSRGTTMVKKRKGRVVIDSDTE 10 20 30 40 50 60 50 60 70 80 90 100 KIAA02 DSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGK ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|739 DSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSNSDDEWTFGSNKNKKKGK 70 80 90 100 110 120 110 120 130 140 150 160 KIAA02 ARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDE 130 140 150 160 170 180 170 180 190 200 210 220 KIAA02 EFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEK :::::::::::::::::::::::::::::::::::::::::::.::::.::::::::::: gi|739 EFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKKRFEIRKKLKTAKKKEK 190 200 210 220 230 240 230 240 250 260 270 280 KIAA02 KEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRT 250 260 270 280 290 300 290 300 310 320 330 340 KIAA02 AELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLP 310 320 330 340 350 360 350 360 370 380 390 400 KIAA02 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQ 370 380 390 400 410 420 410 420 430 440 450 460 KIAA02 LGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKE 430 440 450 460 470 480 470 480 490 500 510 520 KIAA02 LSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQ 490 500 510 520 530 540 530 540 550 560 570 580 KIAA02 DQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTR 550 560 570 580 590 600 590 600 610 620 630 640 KIAA02 RQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSE ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|739 RQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMTKGQGKDKDLNSKSASDLSE 610 620 630 640 650 660 650 660 670 680 690 700 KIAA02 DLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 670 680 690 700 710 >>gi|123858363|emb|CAM18078.1| Rtf1 Paf1/RNA polymerase (715 aa) initn: 4418 init1: 4418 opt: 4418 Z-score: 3492.9 bits: 656.8 E(): 7.5e-186 Smith-Waterman score: 4418; 98.146% identity (99.715% similar) in 701 aa overlap (2-702:15-715) 10 20 30 40 KIAA02 RAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDT ::.:::::::::::::::: :: ::::::::::::::::::::::: gi|123 MRGRLCVGRAAAVAAAVAAAAVAVPLAGGQEGSQGGVRRGSRGTTMVKKRKGRVVIDSDT 10 20 30 40 50 60 50 60 70 80 90 100 KIAA02 EDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKG 70 80 90 100 110 120 110 120 130 140 150 160 KIAA02 KARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSED :.::.::::.:::::::.:::::::.:::::::::::::::::.:.:::::::::::::: gi|123 KTRKVEKKGAMKKQANKAASSGSSDRDSSAESSAPEEGEVSDSESSSSSSSSDSDSSSED 130 140 150 160 170 180 170 180 190 200 210 220 KIAA02 EEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKE 190 200 210 220 230 240 230 240 250 260 270 280 KIAA02 KKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 KKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNR 250 260 270 280 290 300 290 300 310 320 330 340 KIAA02 TAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSL ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|123 TAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSL 310 320 330 340 350 360 350 360 370 380 390 400 KIAA02 PEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 PEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVY 370 380 390 400 410 420 410 420 430 440 450 460 KIAA02 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKK 430 440 450 460 470 480 470 480 490 500 510 520 KIAA02 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQI 490 500 510 520 530 540 530 540 550 560 570 580 KIAA02 QDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFT :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|123 QDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMRNQQMDPFT 550 560 570 580 590 600 590 600 610 620 630 640 KIAA02 RRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLS ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|123 RRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKTASDLS 610 620 630 640 650 660 650 660 670 680 690 700 KIAA02 EDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 670 680 690 700 710 >>gi|118595726|sp|Q92541.3|RTF1_HUMAN RecName: Full=RNA (670 aa) initn: 4289 init1: 4289 opt: 4289 Z-score: 3391.5 bits: 638.0 E(): 3.3e-180 Smith-Waterman score: 4289; 100.000% identity (100.000% similar) in 670 aa overlap (33-702:1-670) 10 20 30 40 50 60 KIAA02 AAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLS :::::::::::::::::::::::::::::: gi|118 MVKKRKGRVVIDSDTEDSGSDENLDQELLS 10 20 30 70 80 90 100 110 120 KIAA02 LAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQA 40 50 60 70 80 90 130 140 150 160 170 180 KIAA02 NKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 NKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDE 100 110 120 130 140 150 190 200 210 220 230 240 KIAA02 EDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 EDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKK 160 170 180 190 200 210 250 260 270 280 290 300 KIAA02 KLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 KLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA02 VYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 VYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA02 RWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 RWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH 340 350 360 370 380 390 430 440 450 460 470 480 KIAA02 GNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 GNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ 400 410 420 430 440 450 490 500 510 520 530 540 KIAA02 DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALD 460 470 480 490 500 510 550 560 570 580 590 600 KIAA02 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDP 520 530 540 550 560 570 610 620 630 640 650 660 KIAA02 AVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL 580 590 600 610 620 630 670 680 690 700 KIAA02 QVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI :::::::::::::::::::::::::::::::::::::::: gi|118 QVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 640 650 660 670 >>gi|194670665|ref|XP_596446.3| PREDICTED: Rtf1, Paf1/RN (670 aa) initn: 4263 init1: 4263 opt: 4263 Z-score: 3371.0 bits: 634.2 E(): 4.6e-179 Smith-Waterman score: 4263; 99.104% identity (100.000% similar) in 670 aa overlap (33-702:1-670) 10 20 30 40 50 60 KIAA02 AAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLS :::::::::::::::::::::::::::::: gi|194 MVKKRKGRVVIDSDTEDSGSDENLDQELLS 10 20 30 70 80 90 100 110 120 KIAA02 LAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQA ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|194 LAKRKRSDSEEKEPPVSQPAASSDSETSNSDDEWTFGSNKNKKKGKARKIEKKGTMKKQA 40 50 60 70 80 90 130 140 150 160 170 180 KIAA02 NKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDE 100 110 120 130 140 150 190 200 210 220 230 240 KIAA02 EDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKK :::::::::::::::::::::::::::::.::::.::::::::::::::::::::::::: gi|194 EDRARLEQMTEKEREQELFNRIEKREVLKKRFEIRKKLKTAKKKEKKEKKKKQEEEQEKK 160 170 180 190 200 210 250 260 270 280 290 300 KIAA02 KLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA02 VYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLE ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|194 VYSDDEEEEEDDKSSEKSDRSSRTTSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA02 RWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH 340 350 360 370 380 390 430 440 450 460 470 480 KIAA02 GNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ 400 410 420 430 440 450 490 500 510 520 530 540 KIAA02 DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALD 460 470 480 490 500 510 550 560 570 580 590 600 KIAA02 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDP 520 530 540 550 560 570 610 620 630 640 650 660 KIAA02 AVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|194 AVQAAILAQLNAKYGSGVLPDAPKEMNKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL 580 590 600 610 620 630 670 680 690 700 KIAA02 QVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI :::::::::::::::::::::::::::::::::::::::: gi|194 QVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 640 650 660 670 >>gi|149692456|ref|XP_001500906.1| PREDICTED: similar to (696 aa) initn: 4104 init1: 4104 opt: 4104 Z-score: 3245.5 bits: 611.0 E(): 4.5e-172 Smith-Waterman score: 4104; 99.379% identity (99.845% similar) in 644 aa overlap (59-702:53-696) 30 40 50 60 70 80 KIAA02 RGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSE :::::::::::::::::::::::::::::: gi|149 DRGGEPPRLAPNCEFRQSPPLFSTVLSTFPELLSLAKRKRSDSEEKEPPVSQPAASSDSE 30 40 50 60 70 80 90 100 110 120 130 140 KIAA02 TSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVS :::::::::::.::::::::::: :::::.:::.:::::::::::::::::::::::::: gi|149 TSDSDDEWTFGNNKNKKKGKARKTEKKGTLKKQTNKTASSGSSDKDSSAESSAPEEGEVS 90 100 110 120 130 140 150 160 170 180 190 200 KIAA02 DSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKRE 150 160 170 180 190 200 210 220 230 240 250 260 KIAA02 VLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLD 210 220 230 240 250 260 270 280 290 300 310 320 KIAA02 KKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSS 270 280 290 300 310 320 330 340 350 360 370 380 KIAA02 SDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS 330 340 350 360 370 380 390 400 410 420 430 440 KIAA02 KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWK 390 400 410 420 430 440 450 460 470 480 490 500 KIAA02 EAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQL 450 460 470 480 490 500 510 520 530 540 550 560 KIAA02 LKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESE 510 520 530 540 550 560 570 580 590 600 610 620 KIAA02 KALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEM 570 580 590 600 610 620 630 640 650 660 670 680 KIAA02 SKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRR 630 640 650 660 670 680 690 700 KIAA02 SLNLEDYKKRRGLI :::::::::::::: gi|149 SLNLEDYKKRRGLI 690 >>gi|75041873|sp|Q5RAD5.1|RTF1_PONAB RecName: Full=RNA p (630 aa) initn: 4021 init1: 4021 opt: 4021 Z-score: 3180.6 bits: 598.9 E(): 1.8e-168 Smith-Waterman score: 4021; 99.683% identity (99.841% similar) in 630 aa overlap (33-662:1-630) 10 20 30 40 50 60 KIAA02 AAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLDQELLS :::::::::::::::::::::::::::: : gi|750 MVKKRKGRVVIDSDTEDSGSDENLDQELPS 10 20 30 70 80 90 100 110 120 KIAA02 LAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQA 40 50 60 70 80 90 130 140 150 160 170 180 KIAA02 NKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 NKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDE 100 110 120 130 140 150 190 200 210 220 230 240 KIAA02 EDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 EDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKK 160 170 180 190 200 210 250 260 270 280 290 300 KIAA02 KLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSE ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|750 KLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTVELLAKKQPLKTSE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA02 VYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 VYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA02 RWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRH 340 350 360 370 380 390 430 440 450 460 470 480 KIAA02 GNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 GNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQ 400 410 420 430 440 450 490 500 510 520 530 540 KIAA02 DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 DIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALD 460 470 480 490 500 510 550 560 570 580 590 600 KIAA02 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDP 520 530 540 550 560 570 610 620 630 640 650 660 KIAA02 AVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDL 580 590 600 610 620 630 670 680 690 700 KIAA02 QVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI >>gi|15929205|gb|AAH15052.1| Rtf1, Paf1/RNA polymerase I (585 aa) initn: 3746 init1: 3746 opt: 3746 Z-score: 2964.2 bits: 558.7 E(): 2.1e-156 Smith-Waterman score: 3746; 100.000% identity (100.000% similar) in 585 aa overlap (118-702:1-585) 90 100 110 120 130 140 KIAA02 ETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEV :::::::::::::::::::::::::::::: gi|159 MKKQANKTASSGSSDKDSSAESSAPEEGEV 10 20 30 150 160 170 180 190 200 KIAA02 SDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 SDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 40 50 60 70 80 90 210 220 230 240 250 260 KIAA02 EVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 EVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKL 100 110 120 130 140 150 270 280 290 300 310 320 KIAA02 DKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 DKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTS 160 170 180 190 200 210 330 340 350 360 370 380 KIAA02 SSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 SSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHN 220 230 240 250 260 270 390 400 410 420 430 440 KIAA02 SKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 SKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKW 280 290 300 310 320 330 450 460 470 480 490 500 KIAA02 KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQ 340 350 360 370 380 390 510 520 530 540 550 560 KIAA02 LLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 LLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVES 400 410 420 430 440 450 570 580 590 600 610 620 KIAA02 EKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 EKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKE 460 470 480 490 500 510 630 640 650 660 670 680 KIAA02 MSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|159 MSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPR 520 530 540 550 560 570 690 700 KIAA02 RSLNLEDYKKRRGLI ::::::::::::::: gi|159 RSLNLEDYKKRRGLI 580 >>gi|73999805|ref|XP_858512.1| PREDICTED: similar to Paf (585 aa) initn: 3736 init1: 3736 opt: 3736 Z-score: 2956.4 bits: 557.3 E(): 5.7e-156 Smith-Waterman score: 3736; 99.487% identity (100.000% similar) in 585 aa overlap (118-702:1-585) 90 100 110 120 130 140 KIAA02 ETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEV :::::::::::::::::::::::::::::: gi|739 MKKQANKTASSGSSDKDSSAESSAPEEGEV 10 20 30 150 160 170 180 190 200 KIAA02 SDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKR 40 50 60 70 80 90 210 220 230 240 250 260 KIAA02 EVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKL ::::.::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EVLKKRFEIRKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKL 100 110 120 130 140 150 270 280 290 300 310 320 KIAA02 DKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTS 160 170 180 190 200 210 330 340 350 360 370 380 KIAA02 SSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHN 220 230 240 250 260 270 390 400 410 420 430 440 KIAA02 SKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKW 280 290 300 310 320 330 450 460 470 480 490 500 KIAA02 KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQ 340 350 360 370 380 390 510 520 530 540 550 560 KIAA02 LLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVES 400 410 420 430 440 450 570 580 590 600 610 620 KIAA02 EKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKE 460 470 480 490 500 510 630 640 650 660 670 680 KIAA02 MSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPR :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MTKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPR 520 530 540 550 560 570 690 700 KIAA02 RSLNLEDYKKRRGLI ::::::::::::::: gi|739 RSLNLEDYKKRRGLI 580 702 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 07:46:26 2009 done: Wed Mar 4 07:50:02 2009 Total Scan time: 1518.270 Total Display time: 0.370 Function used was FASTA [version 34.26.5 April 26, 2007]