hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21315861/chunk_1/iprscan-20080501-21315861.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0249 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08235.3.fs LNS2 (Lipin/Ned1/Smp2) 351.7 2.4e-104 1 PF08235.3.ls LNS2 (Lipin/Ned1/Smp2) 353.6 3e-103 1 PF04571.5.ls lipin, N-terminal conserved region 282.4 8.2e-82 1 PF04571.5.fs lipin, N-terminal conserved region 280.4 3.2e-81 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04571.5.fs 1/1 7 120 .. 1 115 [] 280.4 3.2e-81 PF04571.5.ls 1/1 7 120 .. 1 115 [] 282.4 8.2e-82 PF08235.3.fs 1/1 691 847 .. 1 158 [] 351.7 2.4e-104 PF08235.3.ls 1/1 691 847 .. 1 158 [] 353.6 3e-103 Alignments of top-scoring domains: PF04571.5.fs: domain 1 of 1, from 7 to 120: score 280.4, E = 3.2e-81 *->MnyVGrlagrvfksVkelynsiNPATLSGAIDVIVVeQpDGslrCSP MnyVG+lag+v+++Vkely++iN+ATLSG+IDVIVV+Q+DGs++CSP KIAA0249 7 MNYVGQLAGQVIVTVKELYKGINQATLSGCIDVIVVQQQDGSYQCSP 53 FhVRFGKlQgVLksseKvVdIeVNGkevDlhMkLgdsGEAFFVeEtedde FhVRFGKl gVL+s+eKv+dIe+NG++vDlhMkLgd+GEAFFVeEte+++ KIAA0249 54 FHVRFGKL-GVLRSKEKVIDIEINGSAVDLHMKLGDNGEAFFVEETEEEY 102 edvPdyLltSPipnktta<-* e++P+yL+tSPip+++++ KIAA0249 103 EKLPAYLATSPIPTEDQF 120 PF04571.5.ls: domain 1 of 1, from 7 to 120: score 282.4, E = 8.2e-82 *->MnyVGrlagrvfksVkelynsiNPATLSGAIDVIVVeQpDGslrCSP MnyVG+lag+v+++Vkely++iN+ATLSG+IDVIVV+Q+DGs++CSP KIAA0249 7 MNYVGQLAGQVIVTVKELYKGINQATLSGCIDVIVVQQQDGSYQCSP 53 FhVRFGKlQgVLksseKvVdIeVNGkevDlhMkLgdsGEAFFVeEtedde FhVRFGKl gVL+s+eKv+dIe+NG++vDlhMkLgd+GEAFFVeEte+++ KIAA0249 54 FHVRFGKL-GVLRSKEKVIDIEINGSAVDLHMKLGDNGEAFFVEETEEEY 102 edvPdyLltSPipnktta<-* e++P+yL+tSPip+++++ KIAA0249 103 EKLPAYLATSPIPTEDQF 120 PF08235.3.fs: domain 1 of 1, from 691 to 847: score 351.7, E = 2.4e-104 *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI ++iSDIDGTITkSD+LG+il+ +GkD Wth+G+a+L++ i+enGYk+ KIAA0249 691 IIISDIDGTITKSDALGQILPQLGKD-WTHQGIAKLYHSINENGYKF 736 iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe +Y++AR+ig+ad+Tr+YL++v+ +G+ LP+Gp+ LSP++lf+A++REvIe KIAA0249 737 LYCSARAIGMADMTRGYLHWVNDKGTILPRGPLMLSPSSLFSAFHREVIE 786 kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF kkPekFKi cL+dI++lF+p+++pFyA+FGNr++Dv++Y++Vgvp rIF KIAA0249 787 KKPEKFKIECLNDIKNLFAPSKQPFYAAFGNRPNDVYAYTQVGVPDCRIF 836 iinpkgevhqe<-* ++npkge+ qe KIAA0249 837 TVNPKGELIQE 847 PF08235.3.ls: domain 1 of 1, from 691 to 847: score 353.6, E = 3e-103 *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI ++iSDIDGTITkSD+LG+il+ +GkD Wth+G+a+L++ i+enGYk+ KIAA0249 691 IIISDIDGTITKSDALGQILPQLGKD-WTHQGIAKLYHSINENGYKF 736 iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe +Y++AR+ig+ad+Tr+YL++v+ +G+ LP+Gp+ LSP++lf+A++REvIe KIAA0249 737 LYCSARAIGMADMTRGYLHWVNDKGTILPRGPLMLSPSSLFSAFHREVIE 786 kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF kkPekFKi cL+dI++lF+p+++pFyA+FGNr++Dv++Y++Vgvp rIF KIAA0249 787 KKPEKFKIECLNDIKNLFAPSKQPFYAAFGNRPNDVYAYTQVGVPDCRIF 836 iinpkgevhqe<-* ++npkge+ qe KIAA0249 837 TVNPKGELIQE 847 //