hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21093235/chunk_1/iprscan-20080501-21093235.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0237 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 54.1 1.9e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 177 280 .. 1 92 [] 54.1 1.9e-11 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 177 to 280: score 54.1, E = 1.9e-11 *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk +L+v +i+Ar+L +++++++ + Y+kv+ ++ ++kTk kk KIAA0237 177 QLEVEVIEARGLTpkpgskslpATYIKVYllengaclakkKTKMTKK 223 tlsgfNPvWnEesetFeFevpp..s.LeieVyDk.......dfiGrvtip t+ P + + + F+ p+++ L++ V+ + ++ +++ f+G ++i KIAA0237 224 TC---DPLYQQ---ALLFDEGPqgKvLQVIVWGDygrmdhkCFMGMAQIM 267 pnnahqhsadglihlsell.ggrh.kl<-* l+el+ + +++ KIAA0237 268 --------------LDELDlSAAVtGW 280 //