# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha06286.fasta.nr -Q ../query/KIAA0237.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0237, 315 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825721 sequences Expectation_n fit: rho(ln(x))= 5.3348+/-0.000181; mu= 9.1794+/- 0.010 mean_var=73.3314+/-14.190, 0's: 39 Z-trim: 47 B-trim: 83 in 1/62 Lambda= 0.149772 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|168267228|dbj|BAG09670.1| regulating synaptic m ( 308) 2004 441.8 7.6e-122 gi|41017811|sp|Q9UJD0.1|RIMS3_HUMAN RecName: Full= ( 308) 1996 440.1 2.5e-121 gi|109003204|ref|XP_001084127.1| PREDICTED: regula ( 308) 1993 439.4 3.9e-121 gi|149694616|ref|XP_001503313.1| PREDICTED: simila ( 308) 1959 432.1 6.4e-119 gi|41017686|sp|Q80U57.2|RIMS3_MOUSE RecName: Full= ( 307) 1949 429.9 2.8e-118 gi|73976827|ref|XP_849264.1| PREDICTED: similar to ( 308) 1947 429.5 3.9e-118 gi|149023850|gb|EDL80347.1| regulating synaptic me ( 307) 1944 428.9 6e-118 gi|41017517|sp|Q9JIR3.1|RIMS3_RAT RecName: Full=Re ( 307) 1940 428.0 1.1e-117 gi|194665462|ref|XP_598160.4| PREDICTED: similar t ( 308) 1922 424.1 1.6e-116 gi|126330437|ref|XP_001381229.1| PREDICTED: simila ( 310) 1760 389.1 5.6e-106 gi|115291936|gb|AAI21921.1| Regulating synaptic me ( 308) 1659 367.3 2.1e-99 gi|118101687|ref|XP_425785.2| PREDICTED: hypotheti ( 309) 1625 359.9 3.4e-97 gi|148725553|emb|CAN87955.1| novel protein similar ( 319) 1556 345.0 1.1e-92 gi|122891221|emb|CAK04669.2| novel protein similar ( 305) 1541 341.8 9.8e-92 gi|118088916|ref|XP_419884.2| PREDICTED: similar t (1695) 1326 295.8 3.7e-77 gi|73974272|ref|XP_532300.2| PREDICTED: similar to (1324) 1324 295.3 4.1e-77 gi|73974256|ref|XP_859040.1| PREDICTED: similar to (1339) 1324 295.3 4.2e-77 gi|73974276|ref|XP_859414.1| PREDICTED: similar to (1527) 1324 295.4 4.6e-77 gi|73974274|ref|XP_849649.1| PREDICTED: similar to (1532) 1324 295.4 4.6e-77 gi|34395823|sp|Q9EQZ7.1|RIMS2_MOUSE RecName: Full= (1530) 1322 294.9 6.2e-77 gi|148676834|gb|EDL08781.1| regulating synaptic me (1537) 1322 294.9 6.3e-77 gi|111600267|gb|AAI18980.1| Rims2 protein [Mus mus (1550) 1322 294.9 6.3e-77 gi|24415910|gb|AAN59930.1| synaptic regulatory pro (1363) 1320 294.5 7.7e-77 gi|8925876|gb|AAF81653.1|AF199331_1 RIM2-5B [Rattu (1525) 1320 294.5 8.4e-77 gi|8925874|gb|AAF81652.1|AF199330_1 RIM2-5A [Rattu (1539) 1320 294.5 8.5e-77 gi|34395746|sp|Q9JIS1.1|RIMS2_RAT RecName: Full=Re (1555) 1320 294.5 8.5e-77 gi|118087271|ref|XP_418375.2| PREDICTED: similar t (1658) 1320 294.5 9e-77 gi|126322189|ref|XP_001369482.1| PREDICTED: simila (1360) 1318 294.0 1e-76 gi|126322187|ref|XP_001369450.1| PREDICTED: simila (1528) 1318 294.1 1.1e-76 gi|114621243|ref|XP_001157316.1| PREDICTED: simila (1367) 1316 293.6 1.4e-76 gi|114621233|ref|XP_001157433.1| PREDICTED: simila (1557) 1316 293.6 1.6e-76 gi|189530073|ref|XP_693100.3| PREDICTED: regulatin ( 656) 1305 291.0 4e-76 gi|149066469|gb|EDM16342.1| regulating synaptic me (1362) 1302 290.6 1.1e-75 gi|149066472|gb|EDM16345.1| regulating synaptic me (1524) 1302 290.6 1.2e-75 gi|149066471|gb|EDM16344.1| regulating synaptic me (1538) 1302 290.6 1.3e-75 gi|149066470|gb|EDM16343.1| regulating synaptic me (1554) 1302 290.6 1.3e-75 gi|221044142|dbj|BAH13748.1| unnamed protein produ ( 498) 1291 287.9 2.6e-75 gi|10799014|gb|AAG23164.1|AF263307_1 rab3 interact ( 700) 1291 288.0 3.5e-75 gi|57160788|emb|CAI39600.1| regulating synaptic me ( 728) 1291 288.0 3.6e-75 gi|10799012|gb|AAG23163.1|AF263306_1 rab3 interact ( 740) 1291 288.0 3.6e-75 gi|10799010|gb|AAG23162.1|AF263305_1 rab3 interact ( 766) 1291 288.0 3.7e-75 gi|57160792|emb|CAI39604.1| regulating synaptic me ( 768) 1291 288.0 3.7e-75 gi|57160789|emb|CAI39601.1| regulating synaptic me ( 794) 1291 288.0 3.8e-75 gi|221040646|dbj|BAH12000.1| unnamed protein produ ( 980) 1291 288.1 4.5e-75 gi|119569172|gb|EAW48787.1| regulating synaptic me ( 993) 1291 288.1 4.6e-75 gi|119569179|gb|EAW48794.1| regulating synaptic me (1032) 1291 288.1 4.7e-75 gi|119569174|gb|EAW48789.1| regulating synaptic me (1058) 1291 288.1 4.8e-75 gi|119569173|gb|EAW48788.1| regulating synaptic me (1060) 1291 288.1 4.8e-75 gi|34395763|sp|Q86UR5.1|RIMS1_HUMAN RecName: Full= (1692) 1291 288.3 7e-75 gi|126310373|ref|XP_001373346.1| PREDICTED: simila (1694) 1290 288.0 8.2e-75 >>gi|168267228|dbj|BAG09670.1| regulating synaptic membr (308 aa) initn: 2004 init1: 2004 opt: 2004 Z-score: 2343.8 bits: 441.8 E(): 7.6e-122 Smith-Waterman score: 2004; 100.000% identity (100.000% similar) in 308 aa overlap (8-315:1-308) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|168 LSQSSLESATSPSCS 300 >>gi|41017811|sp|Q9UJD0.1|RIMS3_HUMAN RecName: Full=Regu (308 aa) initn: 1996 init1: 1996 opt: 1996 Z-score: 2334.4 bits: 440.1 E(): 2.5e-121 Smith-Waterman score: 1996; 99.675% identity (100.000% similar) in 308 aa overlap (8-315:1-308) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM :::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|410 MFNGEPGPASSGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|410 LSQSSLESATSPSCS 300 >>gi|109003204|ref|XP_001084127.1| PREDICTED: regulating (308 aa) initn: 1993 init1: 1993 opt: 1993 Z-score: 2330.9 bits: 439.4 E(): 3.9e-121 Smith-Waterman score: 1993; 99.351% identity (100.000% similar) in 308 aa overlap (8-315:1-308) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM :::::::::::::::::::::::.:::::::::::::::.::::::::::::: gi|109 MFNGEPGPASSGASRNVVRSSSISGEICGSQQAGGGAGTSTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|109 LSQSSLESATSPSCS 300 >>gi|149694616|ref|XP_001503313.1| PREDICTED: similar to (308 aa) initn: 1959 init1: 1959 opt: 1959 Z-score: 2291.2 bits: 432.1 E(): 6.4e-119 Smith-Waterman score: 1959; 97.403% identity (100.000% similar) in 308 aa overlap (8-315:1-308) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::::::::..:::::::::::.:::::::::::::::::.::::::::::: gi|149 MFNGEPGPASAAASRNVVRSSSISGEICGSQQAGGGAGTTTTKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::::::::::::::::::..::::::.:::::::::::: gi|149 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTCDPVYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|149 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVAGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|149 LSQSSLESATSPSCS 300 >>gi|41017686|sp|Q80U57.2|RIMS3_MOUSE RecName: Full=Regu (307 aa) initn: 1188 init1: 1188 opt: 1949 Z-score: 2279.6 bits: 429.9 E(): 2.8e-118 Smith-Waterman score: 1949; 97.403% identity (99.675% similar) in 308 aa overlap (8-315:1-307) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::::::::.::::::::::::.::::::::::::::::::::::::::::: gi|410 MFNGEPGPASAGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV ::::.::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|410 SNSSEGTFIFPT-RLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::.::::::::.::::::..::::::::::::::::::: gi|410 EVIEARGLTPKPGSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|410 LSQSSLESATSPSCS 300 >>gi|73976827|ref|XP_849264.1| PREDICTED: similar to Reg (308 aa) initn: 1947 init1: 1947 opt: 1947 Z-score: 2277.2 bits: 429.5 E(): 3.9e-118 Smith-Waterman score: 1947; 97.078% identity (99.351% similar) in 308 aa overlap (8-315:1-308) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::::::::..:::::::::::.:::::::::::: :::::::::::::::: gi|739 MFNGEPGPASAAASRNVVRSSSISGEICGSQQAGGGPGTTTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|739 VAIVGLTQWSKSTLQLPQSEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SNSSEGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::::::::::::::::::..::::::::::::::::::: gi|739 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|739 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLTAAVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|739 LSQSSLESATSPSCS 300 >>gi|149023850|gb|EDL80347.1| regulating synaptic membra (307 aa) initn: 1183 init1: 1183 opt: 1944 Z-score: 2273.7 bits: 428.9 E(): 6e-118 Smith-Waterman score: 1944; 97.078% identity (99.675% similar) in 308 aa overlap (8-315:1-307) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::::::::.::::::::::::.::::::::::::::::::::::::::::: gi|149 MFNGEPGPASAGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV ::::.::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SNSSEGTFIFPT-RLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::.::::::::.::::::..::::::::::::::::::: gi|149 EVIEARGLTPKPGSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|149 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAVVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|149 LSQSSLESATSPSCS 300 >>gi|41017517|sp|Q9JIR3.1|RIMS3_RAT RecName: Full=Regula (307 aa) initn: 1179 init1: 1179 opt: 1940 Z-score: 2269.1 bits: 428.0 E(): 1.1e-117 Smith-Waterman score: 1940; 96.753% identity (99.675% similar) in 308 aa overlap (8-315:1-307) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::::::::.::::::::::::.::::::::::::::::::::::::::::: gi|410 MFNGEPGPASAGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV ::::.::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|410 SNSSEGTFIFPT-RLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::.::::::::.::::::..::::::::::::::::::: gi|410 EVIEARGLTPKPGSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::.::::::.::::::::::::::::: gi|410 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAVVTGWYKFFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|410 LSQSSLESATSPSCS 300 >>gi|194665462|ref|XP_598160.4| PREDICTED: similar to Re (308 aa) initn: 1922 init1: 1922 opt: 1922 Z-score: 2248.0 bits: 424.1 E(): 1.6e-116 Smith-Waterman score: 1922; 95.779% identity (98.701% similar) in 308 aa overlap (8-315:1-308) 10 20 30 40 50 60 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKM ::::: ::::..:::::::::::.:::::::::: :.::.::::::::::::: gi|194 MFNGESGPASAAASRNVVRSSSISGEICGSQQAGDGTGTSTAKKRRSSLGAKM 10 20 30 40 50 70 80 90 100 110 120 KIAA02 VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN :::::::::::.:::::: ::::::::::::::::::.:::::::: ::::::::::::: gi|194 VAIVGLTQWSKGTLQLPQAEGATKKLRSNIRRSTETGVAVEMRSRVPRQGSRESTDGSTN 60 70 80 90 100 110 130 140 150 160 170 180 KIAA02 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV 120 130 140 150 160 170 190 200 210 220 230 240 KIAA02 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ :::::::::::::::::::::::::::::::::::::::..::::::::::::::::::: gi|194 EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKVAKKTCDPLYQQALLFDEGPQ 180 190 200 210 220 230 250 260 270 280 290 300 KIAA02 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR 240 250 260 270 280 290 310 KIAA02 LSQSSLESATSPSCS ::::::::::::::: gi|194 LSQSSLESATSPSCS 300 >>gi|126330437|ref|XP_001381229.1| PREDICTED: similar to (310 aa) initn: 1655 init1: 1655 opt: 1760 Z-score: 2058.8 bits: 389.1 E(): 5.6e-106 Smith-Waterman score: 1760; 87.702% identity (96.117% similar) in 309 aa overlap (8-314:1-309) 10 20 30 40 50 KIAA02 GPATPGTMFNGEPGPASSGASRNVVRSSSIGGEICGS--QQAGGGAGTTTAKKRRSSLGA ::.:::: . ...::::::::::.::. :. .:::: ::..::::::::::: gi|126 MFDGEPGTGPAASSRNVVRSSSISGEVFGGGGEQAGGTAGASTAKKRRSSLGA 10 20 30 40 50 60 70 80 90 100 110 KIAA02 KMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGS ::.::::::: :.:.::::::::. ::: ::::::::::::::::::::::::::::::: gi|126 KMAAIVGLTQRSRSSLQLPQPEGGPKKLPSNIRRSTETGIAVEMRSRVTRQGSRESTDGS 60 70 80 90 100 110 120 130 140 150 160 170 KIAA02 TNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQL ::::::::::::::.::::::::::::::::::::::::::.::::::::::.::::::: gi|126 TNSNSSDGTFIFPTARLGAESQFSDFLDGLGPAQIVGRQTLGTPPMGDVHIAMMDRSGQL 120 130 140 150 160 170 180 190 200 210 220 230 KIAA02 EVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEG ::::::::::::: ::::::::::::::::::::::::::...::::::::.:::::::: gi|126 EVEVIEARGLTPKLGSKSLPATYIKVYLLENGACLAKKKTRVAKKTCDPLYHQALLFDEG 180 190 200 210 220 230 240 250 260 270 280 290 KIAA02 PQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLT ::::::::::::::::::::::::::::.:.::::: .::::::::::::::::::: :: gi|126 PQGKVLQVIVWGDYGRMDHKCFMGMAQIVLEELDLSNVVTGWYKLFPTSSVADSTLGPLT 240 250 260 270 280 290 300 310 KIAA02 RRLSQSSLESATSPSCS ::::::::::.::::: gi|126 RRLSQSSLESSTSPSCP 300 310 315 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 06:42:50 2009 done: Wed Mar 4 06:48:11 2009 Total Scan time: 1429.260 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]