# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha06286.fasta.huge -Q ../query/KIAA0237.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0237, 315 aa vs ./tmplib.23147 library 1987190 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.0318+/-0.00539; mu= 12.4935+/- 0.367 mean_var=107.5708+/-24.848, 0's: 0 Z-trim: 7 B-trim: 0 in 0/40 Lambda= 0.123659 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0751 ( 1200 res) hk04424 (1200) 1145 215.0 1.4e-56 KIAA1228 ( 843 res) fh05620s1 ( 843) 159 38.9 0.001 KIAA0538 ( 816 res) hg03944(revised) ( 816) 143 36.1 0.0073 >>KIAA0751 ( 1200 res) hk04424 (1200 aa) initn: 1163 init1: 1134 opt: 1145 Z-score: 1107.5 bits: 215.0 E(): 1.4e-56 Smith-Waterman score: 1145; 69.478% identity (88.755% similar) in 249 aa overlap (75-315:950-1198) 50 60 70 80 90 KIAA02 GTTTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQ--PEGAT------KKLRSNIRRSTET :::: :.:. :::::...::::: KIAA07 PSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQLPPKGTLDRKAGGKKLRSTVQRSTET 920 930 940 950 960 970 100 110 120 130 140 150 KIAA02 GIAVEMRSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGR :.:::::. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.::: KIAA07 GLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGR 980 990 1000 1010 1020 1030 160 170 180 190 200 210 KIAA02 QTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKK :::::: :::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::: KIAA07 QTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKK 1040 1050 1060 1070 1080 1090 220 230 240 250 260 270 KIAA02 KTKMTKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAA :::...:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: KIAA07 KTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNM 1100 1110 1120 1130 1140 1150 280 290 300 310 KIAA02 VTGWYKLFPTSSVADSTLGSLTRRLSQSSLESATSPSCS : ::.:::: ::..: ::. :::: :::::::.:.:: : KIAA07 VIGWFKLFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS 1160 1170 1180 1190 1200 >>KIAA1228 ( 843 res) fh05620s1 (843 aa) initn: 126 init1: 73 opt: 159 Z-score: 158.6 bits: 38.9 E(): 0.001 Smith-Waterman score: 159; 28.986% identity (62.319% similar) in 138 aa overlap (152-283:697-832) 130 140 150 160 170 KIAA02 NSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRS--GQLE :. . ::. :.:.....: : ..: KIAA12 GHISVKEPTPSIASDISLPIATQELRQRLRQLENGTTLGQSPLGQIQLTIRHSSQRNKLI 670 680 690 700 710 720 180 190 200 210 220 230 KIAA02 VEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEG- : : :.: . : : :...::: . ...::...::: .:...:.. :. . KIAA12 VVVHACRNLIAFSEDGSDP--YVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 730 740 750 760 770 780 240 250 260 270 280 290 KIAA02 P--QGKVLQVIVWGDYGRMDH-KCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLG : : ..:.: : .. : ... : ..: . . : .:. . : :: : KIAA12 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDGTRPQAMT 790 800 810 820 830 840 300 310 KIAA02 SLTRRLSQSSLESATSPSCS >>KIAA0538 ( 816 res) hg03944(revised) (816 aa) initn: 81 init1: 54 opt: 143 Z-score: 143.3 bits: 36.1 E(): 0.0073 Smith-Waterman score: 143; 27.778% identity (61.806% similar) in 144 aa overlap (165-297:131-265) 140 150 160 170 180 190 KIAA02 LGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIM----DRSGQLEVEVIEARGLTP :..:. . :. .:. :.::: :.: KIAA05 CLTRDTIASHPKGFSGWAHLTEVDPDEEVQGEIHLRLEVWPGARACRLRCSVLEARDLAP 110 120 130 140 150 160 200 210 220 230 240 KIAA02 KP-GSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFD--EGPQGKVLQVI : .. : : ...: .: ..:...::.: : ..... :. :: . ..: : KIAA05 KDRNGTSDP--FVRVRY--KG---RTRETSIVKKSCYPRWNETFEFELQEGAM-EALCVE 170 180 190 200 210 250 260 270 280 290 300 KIAA02 VWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVA----DSTLGSLTRRLSQ .: :. .... :.: . : ...: . ::..: : .: . ...:::: KIAA05 AW-DWDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRLQPDQSKSRRHDEGNLGSLQLEVRL 220 230 240 250 260 270 310 KIAA02 SSLESATSPSCS KIAA05 RDETVLPSSYYQPLVHLLCHEVKLGMQGPGQLIPLIEETTSTECRQDVATNLLKLFLGQG 280 290 300 310 320 330 315 residues in 1 query sequences 1987190 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:12:52 2008 done: Thu Dec 18 15:12:52 2008 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]