hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21074844/chunk_1/iprscan-20080501-21074844.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0236 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 727.1 4.5e-214 36 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/36 172 194 .. 1 23 [] 18.2 1.2 SM00355 2/36 200 220 .. 1 23 [] 11.8 15 SM00355 3/36 228 251 .. 1 23 [] 25.6 0.0068 SM00355 4/36 262 284 .. 1 23 [] 26.7 0.0033 SM00355 5/36 295 320 .. 1 23 [] 23.6 0.027 SM00355 6/36 325 349 .. 1 23 [] 15.5 5.6 SM00355 7/36 352 375 .. 1 23 [] 18.7 0.82 SM00355 8/36 381 404 .. 1 23 [] 20.4 0.26 SM00355 9/36 410 432 .. 1 23 [] 26.1 0.0049 SM00355 10/36 438 460 .. 1 23 [] 25.0 0.01 SM00355 11/36 466 488 .. 1 23 [] 29.1 0.00062 SM00355 12/36 494 516 .. 1 23 [] 21.6 0.11 SM00355 13/36 521 544 .. 1 23 [] 24.5 0.014 SM00355 14/36 553 576 .. 1 23 [] 14.1 8.2 SM00355 15/36 582 605 .. 1 23 [] 16.2 4.7 SM00355 16/36 845 867 .. 1 23 [] 11.3 17 SM00355 17/36 875 895 .. 1 23 [] 7.4 46 SM00355 18/36 1035 1055 .. 1 23 [] 1.5 2.2e+02 SM00355 19/36 1113 1133 .. 1 23 [] 9.1 29 SM00355 20/36 1144 1167 .. 1 23 [] 21.5 0.12 SM00355 21/36 1180 1203 .. 1 23 [] 19.0 0.65 SM00355 22/36 1209 1231 .. 1 23 [] 24.8 0.012 SM00355 23/36 1237 1260 .. 1 23 [] 18.3 1.1 SM00355 24/36 1266 1289 .. 1 23 [] 14.2 7.8 SM00355 25/36 1295 1318 .. 1 23 [] 24.6 0.014 SM00355 26/36 1337 1360 .. 1 23 [] 19.2 0.6 SM00355 27/36 1363 1386 .. 1 23 [] 22.5 0.06 SM00355 28/36 1389 1412 .. 1 23 [] 20.6 0.22 SM00355 29/36 1433 1455 .. 1 23 [] 18.5 0.94 SM00355 30/36 1461 1483 .. 1 23 [] 21.7 0.1 SM00355 31/36 1489 1511 .. 1 23 [] 26.4 0.0041 SM00355 32/36 1517 1539 .. 1 23 [] 27.9 0.0014 SM00355 33/36 1545 1568 .. 1 23 [] 26.9 0.0028 SM00355 34/36 1574 1596 .. 1 23 [] 29.3 0.00052 SM00355 35/36 1602 1624 .. 1 23 [] 24.6 0.014 SM00355 36/36 1630 1652 .. 1 23 [] 20.9 0.18 Alignments of top-scoring domains: SM00355: domain 1 of 36, from 172 to 194: score 18.2, E = 1.2 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C+++f+ +++L++H+ H KIAA0236 172 HMCPE-CKRCFKKRtHLVEHLHLH 194 SM00355: domain 2 of 36, from 200 to 220: score 11.8, E = 15 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp C+k f+sk+ Lk H+ KIAA0236 200 LQCPN-CQKFFTSKsKLKTHLL-- 220 SM00355: domain 3 of 36, from 228 to 251: score 25.6, E = 0.0068 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++Cp+ C++s ++aL+rHm ++H KIAA0236 228 HHCPL-CHYSAVERnALNRHMAsMH 251 SM00355: domain 4 of 36, from 262 to 284: score 26.7, E = 0.0033 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cp+ C + f+ +aLk+H+++H KIAA0236 262 YACPV-CREEFRLSqALKEHLKSH 284 SM00355: domain 5 of 36, from 295 to 320: score 23.6, E = 0.027 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* ++C ++gC++ ++++a+++H++++H KIAA0236 295 LRCFQeGCSYAAPDRkAFIKHLKeTH 320 SM00355: domain 6 of 36, from 325 to 349: score 15.5, E = 5.6 *->ykCpi.gCgksfssk.aLkrHmrvH<-* +C ++ C++ f +++a++ H ++H KIAA0236 325 VECRHhSCPMLFATAeAMEAHHKSH 349 SM00355: domain 7 of 36, from 352 to 375: score 18.7, E = 0.82 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++Cp+ C++ +s+k+ +++H ++ H KIAA0236 352 FHCPH-CDFACSNKhLFRKHKKqGH 375 SM00355: domain 8 of 36, from 381 to 404: score 20.4, E = 0.26 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C++ + ++ a++ H+ ++H KIAA0236 381 LRCTF-CPFATFNPvAYQDHVGkMH 404 SM00355: domain 9 of 36, from 410 to 432: score 26.1, E = 0.0049 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C++ + +k+ L+rHm H KIAA0236 410 HQCPE-CNFATAHKrVLIRHMLLH 432 SM00355: domain 10 of 36, from 438 to 460: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++++++ + L +Hm +H KIAA0236 438 HKCEL-CDFTCRDVsYLSKHMLTH 460 SM00355: domain 11 of 36, from 466 to 488: score 29.1, E = 0.00062 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+++++k+ L+ Hmr+H KIAA0236 466 YMCTE-CGYVTKWKhYLRVHMRKH 488 SM00355: domain 12 of 36, from 494 to 516: score 21.6, E = 0.11 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+++++++++L H +H KIAA0236 494 YQCNQ-CSYRCHRAdQLSSHKLRH 516 SM00355: domain 13 of 36, from 521 to 544: score 24.5, E = 0.014 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C + +++k +L++Hm ++H KIAA0236 521 LMCEV-CAFACKRKyELQKHMAsQH 544 SM00355: domain 14 of 36, from 553 to 576: score 14.1, E = 8.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C+++ ++k+a H +H KIAA0236 553 YPCHY-CSYQSRHKqAVLSHENcKH 576 SM00355: domain 15 of 36, from 582 to 605: score 16.2, E = 4.7 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++++ s + L H r+ H KIAA0236 582 FHCAL-CDYRTFSNtTLLFHKRkAH 605 SM00355: domain 16 of 36, from 845 to 867: score 11.3, E = 17 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C++ +++++aL+ H r+ KIAA0236 845 FRCPH-CPFITRREkALNLHSRTG 867 SM00355: domain 17 of 36, from 875 to 895: score 7.4, E = 46 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ Cg sf++++ L H+ KIAA0236 875 LLCPE-CGASFKQQrGLSTHLL-- 895 SM00355: domain 18 of 36, from 1035 to 1055: score 1.5, E = 2.2e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ C++ +s+ ++ + H+ KIAA0236 1035 FHCNS-CPFLCSRLsSITSHVA-- 1055 SM00355: domain 19 of 36, from 1113 to 1133: score 9.1, E = 29 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp C++s+ +++aL+ H+ KIAA0236 1113 FSCPT-CPFSCQQErALRTHQI-- 1133 SM00355: domain 20 of 36, from 1144 to 1167: score 21.5, E = 0.12 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C+++ + ++aL+ H++++H KIAA0236 1144 LHCSL-CPFTAPAAtALRLHQKrRH 1167 SM00355: domain 21 of 36, from 1180 to 1203: score 19.0, E = 0.65 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C Cg+++++ + +++H r +H KIAA0236 1180 LQCGD-CGFTCKQSrCMQQHRRlKH 1203 SM00355: domain 22 of 36, from 1209 to 1231: score 24.8, E = 0.012 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C++s++++ L+ H+ +H KIAA0236 1209 HQCPF-CDFSTTRRyRLEAHQSRH 1231 SM00355: domain 23 of 36, from 1237 to 1260: score 18.3, E = 1.1 *->ykCpigCgksfssk.aLkrHmr.vH<-* C+ C+++f + + L+ H +vH KIAA0236 1237 IPCSS-CPQTFGTNsKLRLHRLrVH 1260 SM00355: domain 24 of 36, from 1266 to 1289: score 14.2, E = 7.8 *->ykCpigCgksfssk.aLkrHmr.vH<-* + Cp+ C++s +++ +rH+ + H KIAA0236 1266 HFCPL-CDYSGYLRhDITRHVNsCH 1289 SM00355: domain 25 of 36, from 1295 to 1318: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C +fss++aLk+H ++H KIAA0236 1295 FACSQ-CEAQFSSEtALKQHALrRH 1318 SM00355: domain 26 of 36, from 1337 to 1360: score 19.2, E = 0.6 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C+ Cg ++s+ +L+ H r++H KIAA0236 1337 LHCSR-CGLLCPSPaSLRGHTRkQH 1360 SM00355: domain 27 of 36, from 1363 to 1386: score 22.5, E = 0.06 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C C++ f+s+ aL +H r++H KIAA0236 1363 LECGA-CQEAFPSRlALDEHRRqQH 1386 SM00355: domain 28 of 36, from 1389 to 1412: score 20.6, E = 0.22 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C++ + + L++H+ ++H KIAA0236 1389 HRCQL-CDFAARERvGLVKHYLeQH 1412 SM00355: domain 29 of 36, from 1433 to 1455: score 18.5, E = 0.94 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C+++++++ L +H++ H KIAA0236 1433 LHCPF-CDFTCRHQlVLDHHVKGH 1455 SM00355: domain 30 of 36, from 1461 to 1483: score 21.7, E = 0.1 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ C +s+++++ + H r+H KIAA0236 1461 YKCTD-CAYSTKNRqKITWHSRIH 1483 SM00355: domain 31 of 36, from 1489 to 1511: score 26.4, E = 0.0041 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C++ + +++ Lk Hmr+H KIAA0236 1489 YHCHL-CPYACADPsRLKYHMRIH 1511 SM00355: domain 32 of 36, from 1517 to 1539: score 27.9, E = 0.0014 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cp+ Cg+++++ ++Lk Hm +H KIAA0236 1517 YLCPE-CGYKCKWVnQLKYHMTKH 1539 SM00355: domain 33 of 36, from 1545 to 1568: score 26.9, E = 0.0028 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+Cp+ C +++++++aL+ H+ ++H KIAA0236 1545 YQCPE-CEYCTNRAdALRVHQEtRH 1568 SM00355: domain 34 of 36, from 1574 to 1596: score 29.3, E = 0.00052 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk f+++ L+ H+r+H KIAA0236 1574 FMCEQ-CGKAFKTRfLLRTHLRKH 1596 SM00355: domain 35 of 36, from 1602 to 1624: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C++ f+++ L++H +H KIAA0236 1602 YVCNV-CHRAFRWAaGLRHHALTH 1624 SM00355: domain 36 of 36, from 1630 to 1652: score 20.9, E = 0.18 *->ykCpigCgksfssk.aLkrHmrvH<-* + C + C+++ ++k + ++H+r+H KIAA0236 1630 FFCRL-CNYKAKQKfQVVKHVRRH 1652 //