hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21074844/chunk_1/iprscan-20080501-21074844.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0236 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 616.4 2.3e-182 36 PF00096.16.fs Zinc finger, C2H2 type 552.0 5.7e-163 36 PF07754.2.fs Domain of unknown function (DUF1610) 22.9 4.1e-05 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/36 172 194 .. 1 24 [] 20.3 0.0066 PF00096.16.fs 4/36 262 284 .. 1 24 [] 24.1 9.4e-05 PF00096.16.ls 4/36 262 284 .. 1 24 [] 26.0 0.00012 PF00096.16.ls 9/36 410 432 .. 1 24 [] 22.2 0.0017 PF00096.16.ls 10/36 438 460 .. 1 24 [] 21.9 0.0021 PF00096.16.ls 11/36 466 488 .. 1 24 [] 27.5 4.3e-05 PF00096.16.fs 11/36 466 488 .. 1 24 [] 25.5 4.1e-05 PF00096.16.ls 13/36 521 544 .. 1 24 [] 21.2 0.0034 PF00096.16.ls 16/36 845 868 .. 1 24 [] 18.8 0.018 PF00096.16.ls 17/36 875 898 .. 1 24 [] 20.0 0.008 PF00096.16.ls 22/36 1209 1231 .. 1 24 [] 23.0 0.001 PF00096.16.ls 23/36 1237 1260 .. 1 24 [] 19.9 0.0082 PF00096.16.ls 25/36 1295 1318 .. 1 24 [] 20.6 0.0052 PF00096.16.ls 31/36 1489 1511 .. 1 24 [] 23.1 0.00093 PF00096.16.ls 32/36 1517 1539 .. 1 24 [] 19.6 0.011 PF00096.16.fs 33/36 1545 1568 .. 1 24 [] 25.6 3.9e-05 PF00096.16.ls 33/36 1545 1568 .. 1 24 [] 27.6 4.2e-05 PF00096.16.fs 34/36 1574 1596 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 34/36 1574 1596 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 35/36 1602 1624 .. 1 24 [] 24.4 8e-05 PF00096.16.ls 35/36 1602 1624 .. 1 24 [] 26.3 9.8e-05 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 36, from 172 to 194: score 20.3, E = 0.0066 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C+++F+ + +L Hl H KIAA0236 172 HMCP-ECKRCFKKRTHLVEHLHLH 194 PF00096.16.fs: domain 4 of 36, from 262 to 284: score 24.1, E = 9.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +C + F+ + Lk Hl++H KIAA0236 262 YACP-VCREEFRLSQALKEHLKSH 284 PF00096.16.ls: domain 4 of 36, from 262 to 284: score 26.0, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +C + F+ + Lk Hl++H KIAA0236 262 YACP-VCREEFRLSQALKEHLKSH 284 PF00096.16.ls: domain 9 of 36, from 410 to 432: score 22.2, E = 0.0017 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C+ + +k L rH+ H KIAA0236 410 HQCP-ECNFATAHKRVLIRHMLLH 432 PF00096.16.ls: domain 10 of 36, from 438 to 460: score 21.9, E = 0.0021 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C+ ++++ s L +H+ tH KIAA0236 438 HKCE-LCDFTCRDVSYLSKHMLTH 460 PF00096.16.ls: domain 11 of 36, from 466 to 488: score 27.5, E = 4.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++ + k+ L+ H+r+H KIAA0236 466 YMCT-ECGYVTKWKHYLRVHMRKH 488 PF00096.16.fs: domain 11 of 36, from 466 to 488: score 25.5, E = 4.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++ + k+ L+ H+r+H KIAA0236 466 YMCT-ECGYVTKWKHYLRVHMRKH 488 PF00096.16.ls: domain 13 of 36, from 521 to 544: score 21.2, E = 0.0034 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ +C +++rk++L++H+ ++H KIAA0236 521 LMCE-VCAFACKRKYELQKHMASqH 544 PF00096.16.ls: domain 16 of 36, from 845 to 868: score 18.8, E = 0.018 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++Cp +C +r + L+ H rt++ KIAA0236 845 FRCP-HCPFITRREKALNLHSRTgC 868 PF00096.16.ls: domain 17 of 36, from 875 to 898: score 20.0, E = 0.008 *->ykCpfdCgksFsrksnLkrHlrt.H<-* Cp +Cg sF+++ L +Hl +++ KIAA0236 875 LLCP-ECGASFKQQRGLSTHLLKkC 898 PF00096.16.ls: domain 22 of 36, from 1209 to 1231: score 23.0, E = 0.001 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp C+ s +r++ L++H+ +H KIAA0236 1209 HQCP-FCDFSTTRRYRLEAHQSRH 1231 PF00096.16.ls: domain 23 of 36, from 1237 to 1260: score 19.9, E = 0.0082 *->ykCpfdCgksFsrksnLkrHlrt.H<-* C+ C ++F ++s L+ H+ + H KIAA0236 1237 IPCS-SCPQTFGTNSKLRLHRLRvH 1260 PF00096.16.ls: domain 25 of 36, from 1295 to 1318: score 20.6, E = 0.0052 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C Fs+ Lk+H ++H KIAA0236 1295 FACS-QCEAQFSSETALKQHALRrH 1318 PF00096.16.ls: domain 31 of 36, from 1489 to 1511: score 23.1, E = 0.00093 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C +++ ++s Lk H+r+H KIAA0236 1489 YHCH-LCPYACADPSRLKYHMRIH 1511 PF00096.16.ls: domain 32 of 36, from 1517 to 1539: score 19.6, E = 0.011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y Cp +Cg++++ +Lk H+ +H KIAA0236 1517 YLCP-ECGYKCKWVNQLKYHMTKH 1539 PF00096.16.fs: domain 33 of 36, from 1545 to 1568: score 25.6, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+Cp +C ++ +r + L+ H+ t+H KIAA0236 1545 YQCP-ECEYCTNRADALRVHQETrH 1568 PF00096.16.ls: domain 33 of 36, from 1545 to 1568: score 27.6, E = 4.2e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+Cp +C ++ +r + L+ H+ t+H KIAA0236 1545 YQCP-ECEYCTNRADALRVHQETrH 1568 PF00096.16.fs: domain 34 of 36, from 1574 to 1596: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++ L++Hlr+H KIAA0236 1574 FMCE-QCGKAFKTRFLLRTHLRKH 1596 PF00096.16.ls: domain 34 of 36, from 1574 to 1596: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++ L++Hlr+H KIAA0236 1574 FMCE-QCGKAFKTRFLLRTHLRKH 1596 PF00096.16.fs: domain 35 of 36, from 1602 to 1624: score 24.4, E = 8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+++F+ + L++H tH KIAA0236 1602 YVCN-VCHRAFRWAAGLRHHALTH 1624 PF00096.16.ls: domain 35 of 36, from 1602 to 1624: score 26.3, E = 9.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+++F+ + L++H tH KIAA0236 1602 YVCN-VCHRAFRWAAGLRHHALTH 1624 //