hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20592182/chunk_1/iprscan-20080501-20592182.nocrc
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Query sequence: KIAA0231
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                            107.1    4.6e-29  11
PF00560.23.fs Leucine Rich Repeat                             86.6    6.9e-23  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   3/11    531   557 ..     1    24 []     9.3      4.9
PF00560.23.ls   4/11    606   627 ..     1    24 []     9.0      5.4
PF00560.23.ls   5/11    629   652 ..     1    24 []    11.7      1.7
PF00560.23.ls   6/11    654   675 ..     1    24 []     8.6      6.5
PF00560.23.fs   7/11    677   698 ..     1    24 []    10.9    0.061
PF00560.23.ls   7/11    677   698 ..     1    24 []    12.8      1.1
PF00560.23.fs   8/11    700   721 ..     1    24 []    15.9   0.0026
PF00560.23.ls   8/11    700   721 ..     1    24 []    17.8    0.037
PF00560.23.fs  11/11    769   790 ..     1    24 []    12.5    0.022
PF00560.23.ls  11/11    769   790 ..     1    24 []    14.4     0.38

Alignments of top-scoring domains:
PF00560.23.ls: domain 3 of 11, from 531 to 557: score 9.3, E = 4.9
                   *->nLeeLdLsgCNpsltgs....lpss.l.nl<-*
                      nL+eL+LsgC   l ++  ++++ +++++l   
    KIAA0231   531    NLKELYLSGC--VL-PEqlstMQLEgFqDL    557  

PF00560.23.ls: domain 4 of 11, from 606 to 627: score 9.0, E = 5.4
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++L+L +C   l+  +p+s+ +l   
    KIAA0231   606    NLKSLELISC--DLE-RIPHSIfSL    627  

PF00560.23.ls: domain 5 of 11, from 629 to 652: score 11.7, E = 1.7
                   *->nLeeLdLsgCNpsltgs...lpssl.nl<-*
                      nL eLdL+  N +l ++ +++ s +++l   
    KIAA0231   629    NLHELDLRE-N-NL-KTveeIIS-FqHL    652  

PF00560.23.ls: domain 6 of 11, from 654 to 675: score 8.6, E = 6.5
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL  L L + N ++   +p+ ++ l   
    KIAA0231   654    NLSCLKLWH-N-NIA-YIPAQIgAL    675  

PF00560.23.fs: domain 7 of 11, from 677 to 698: score 10.9, E = 0.061
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nLe L+L++ N +++ +lp  l  +   
    KIAA0231   677    NLEQLSLDH-N-NIE-NLPLQLfLC    698  

PF00560.23.ls: domain 7 of 11, from 677 to 698: score 12.8, E = 1.1
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nLe L+L++ N +++ +lp  l  +   
    KIAA0231   677    NLEQLSLDH-N-NIE-NLPLQLfLC    698  

PF00560.23.fs: domain 8 of 11, from 700 to 721: score 15.9, E = 0.0026
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L +LdLs+ N +lt  +p++++ l   
    KIAA0231   700    KLHYLDLSY-N-HLT-FIPEEIqYL    721  

PF00560.23.ls: domain 8 of 11, from 700 to 721: score 17.8, E = 0.037
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L +LdLs+ N +lt  +p++++ l   
    KIAA0231   700    KLHYLDLSY-N-HLT-FIPEEIqYL    721  

PF00560.23.fs: domain 11 of 11, from 769 to 790: score 12.5, E = 0.022
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++L+L g N  l+ +lp++l+++   
    KIAA0231   769    NLTHLELIG-N-YLE-TLPPELeGC    790  

PF00560.23.ls: domain 11 of 11, from 769 to 790: score 14.4, E = 0.38
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++L+L g N  l+ +lp++l+++   
    KIAA0231   769    NLTHLELIG-N-YLE-TLPPELeGC    790  

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