hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20524479/chunk_1/iprscan-20080501-20524479.nocrc
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Query sequence: KIAA0227
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.fs Tetratricopeptide repeat                        36.6    3.3e-09   2
PF07719.7.ls Tetratricopeptide repeat                        40.6    5.1e-09   2
PF00515.18.ls Tetratricopeptide repeat                        35.3    1.9e-07   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07719.7.fs   2/2     278   311 ..     1    34 []    29.7  2.7e-07
PF00515.18.ls   3/3     278   311 ..     1    34 []    30.4  5.8e-06
PF07719.7.ls   2/2     278   311 ..     1    34 []    31.7  2.4e-06

Alignments of top-scoring domains:
PF07719.7.fs: domain 2 of 2, from 278 to 311: score 29.7, E = 2.7e-07
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      ++aly+ G+a y+lgdy++Al ++++A    P++   
    KIAA0227   278    FKALYRSGVAFYHLGDYDKALYYLKEARTQQPTD    311  

PF00515.18.ls: domain 3 of 3, from 278 to 311: score 30.4, E = 5.8e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +a+y+ G+a+++lg+yd+A+ ++++A   +P++   
    KIAA0227   278    FKALYRSGVAFYHLGDYDKALYYLKEARTQQPTD    311  

PF07719.7.ls: domain 2 of 2, from 278 to 311: score 31.7, E = 2.4e-06
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      ++aly+ G+a y+lgdy++Al ++++A    P++   
    KIAA0227   278    FKALYRSGVAFYHLGDYDKALYYLKEARTQQPTD    311  

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