hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20425104/chunk_1/iprscan-20080501-20425104.nocrc
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Query sequence: KIAA0221
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04851.6.fs Type III restriction enzyme, res subunit        28.7    1.2e-07   1
PF04851.6.ls Type III restriction enzyme, res subunit         0.8    3.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04851.6.fs   1/1     501   567 ..     1    93 [.    28.7  1.2e-07
PF04851.6.ls   1/1     501   637 ..     1   238 []     0.8  3.7e-05

Alignments of top-scoring domains:
PF04851.6.fs: domain 1 of 1, from 501 to 567: score 28.7, E = 1.2e-07
                   *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs
                      +  l+  Q++A++ +l                  +++  li+ + G+
    KIAA0221   501    LPDLNHSQVYAVKTVL------------------QRPLSLIQGPPGT 529  

                   GKTltaakiliarLlkkqqklkkgridkvLFlVprkdLleQaleeF<-*
                   GKT+t+a  +++ L++     ++++  +vL+ +p+++ ++Q+ e++   
    KIAA0221   530 GKTVTSAT-IVYHLAR-----QGNG--PVLVCAPSNIAVDQLTEKI    567  

PF04851.6.ls: domain 1 of 1, from 501 to 637: score 0.8, E = 3.7e-05
                   *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs
                      +  l+  Q++A++ +l                  +++  li+ + G+
    KIAA0221   501    LPDLNHSQVYAVKTVL------------------QRPLSLIQGPPGT 529  

                   GKTltaakiliarLlkkqqklkkgridkvLFlVprkdLleQaleeFtkfe
                   GKT+t+a  +++ L++     ++++  +vL+ +p+++ ++Q+ e++    
    KIAA0221   530 GKTVTSAT-IVYHLAR-----QGNG--PVLVCAPSNIAVDQLTEKI---- 567  

                   skkkkef.knpgvdkklkvltdnqkdsadggkskkndikiifttiQkLsk
                      +    k +  + k +  +d++ ++                    L++
    KIAA0221   568 ---HQTGlKVVRLCAKSREAIDSPVSFLA------------------LHN 596  

                   alkeekendeeekskskeivvglrlapesleflldefdviIiDEaHrssa
                   ++++ +   e +k               +l+           DE   +s+
    KIAA0221   597 QIRNMDSMPELQKL-------------QQLK-----------DETGELSS 622  

                   ktkskkrdedaeklavyrkileKWlkyfkpaflLGlTATPer<-*
                    +++            yr+++                 T er   
    KIAA0221   623 ADEKR-----------YRALKR----------------TAER    637  

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