hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20222225/chunk_1/iprscan-20080501-20222225.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07653.7.fs Variant SH3 domain                              24.1    2.7e-06   1
PF07653.7.ls Variant SH3 domain                              25.9    0.00013   1
PF00018.18.ls SH3 domain                                      16.5    0.00035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00018.18.ls   1/1      23    79 ..     1    59 []    16.5  0.00035
PF07653.7.fs   1/1      24    78 ..     1    69 []    24.1  2.7e-06
PF07653.7.ls   1/1      24    78 ..     1    69 []    25.9  0.00013

Alignments of top-scoring domains:
PF00018.18.ls: domain 1 of 1, from 23 to 79: score 16.5, E = 0.00035
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgG.
                      +  vA+Y ++++++  Ls++ GDv+ + e + + +W++g l+    +
    KIAA0209    23    RHGVAIYNFQGSGAPQLSLQIGDVVRIQE-TCG-DWYRGYLI---Kh 64   

                   ..keGliPsNYVepv<-*
                   +  +G++P +++  +   
    KIAA0209    65 kmLQGIFPKSFIHIK    79   

PF07653.7.fs: domain 1 of 1, from 24 to 78: score 24.1, E = 2.7e-06
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      +g+ai ++ + ++++       Lsl+ Gdvv+++     +  ++w++
    KIAA0209    24    HGVAIYNFQG-SGAPQ------LSLQIGDVVRIQ-----ETCGDWYR 58   

                   geslggGrrr.RGlvPssaveel<-*
                   g++   ++++  G +P s++ ++   
    KIAA0209    59 GYL--IKHKMlQGIFPKSFI-HI    78   

PF07653.7.ls: domain 1 of 1, from 24 to 78: score 25.9, E = 0.00013
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      +g+ai ++ + ++++       Lsl+ Gdvv+++     +  ++w++
    KIAA0209    24    HGVAIYNFQG-SGAPQ------LSLQIGDVVRIQ-----ETCGDWYR 58   

                   geslggGrrr.RGlvPssaveel<-*
                   g++   ++++  G +P s++ ++   
    KIAA0209    59 GYL--IKHKMlQGIFPKSFI-HI    78   

//