hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19475509/chunk_1/iprscan-20080501-19475509.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0188
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00775                                                 354.1   8.6e-102   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00775    1/1     683   839 ..     1   159 []   354.1 8.6e-102

Alignments of top-scoring domains:
SM00775: domain 1 of 1, from 683 to 839: score 354.1, E = 8.6e-102
                   *->iViSDIDGTITKSDvLGHvlpmiGkDDWtHpGVAkLytkIqnnGYkI
                      ++iSDIDGTIT+SD LGH+lp +Gk DWtH+G+AkLy+k+ +nGYk+
    KIAA0188   683    VIISDIDGTITRSDTLGHILPTLGK-DWTHQGIAKLYHKVSQNGYKF 728  

                   lYLTARaigQadsTrsYLkqvkQdGnhnLPdGPVllsPdrlfaALhREVI
                   lY++ARaig+ad+Tr YL++v++ G + LP+GP+llsP++lf+ALhREVI
    KIAA0188   729 LYCSARAIGMADMTRGYLHWVNERG-TVLPQGPLLLSPSSLFSALHREVI 777  

                   skkPevFKiacLrdirnlFppqgnpFyAGFGNRitDvisYravgippsrI
                   +kkPe+FK  cL di+nlF p+++pFyA+FGNR+ Dv+sY++vg+  +rI
    KIAA0188   778 EKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNRI 827  

                   FtInpkgevhqe<-*
                   Ft+npkge+ qe   
    KIAA0188   828 FTVNPKGELVQE    839  

//