hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19475509/chunk_1/iprscan-20080501-19475509.nocrc
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Query sequence: KIAA0188
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08235.3.fs LNS2 (Lipin/Ned1/Smp2)                         363.2   9.1e-108   1
PF08235.3.ls LNS2 (Lipin/Ned1/Smp2)                         365.1     1e-106   1
PF04571.5.ls lipin, N-terminal conserved region             274.6    1.7e-79   1
PF04571.5.fs lipin, N-terminal conserved region             272.7    6.7e-79   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04571.5.fs   1/1      10   123 ..     1   115 []   272.7  6.7e-79
PF04571.5.ls   1/1      10   123 ..     1   115 []   274.6  1.7e-79
PF08235.3.fs   1/1     683   839 ..     1   158 []   363.2 9.1e-108
PF08235.3.ls   1/1     683   839 ..     1   158 []   365.1   1e-106

Alignments of top-scoring domains:
PF04571.5.fs: domain 1 of 1, from 10 to 123: score 272.7, E = 6.7e-79
                   *->MnyVGrlagrvfksVkelynsiNPATLSGAIDVIVVeQpDGslrCSP
                      MnyVG+lag+vf++Vkely+++NPATLSG+ID+IV++Qp+G+l+CSP
    KIAA0188    10    MNYVGQLAGQVFVTVKELYKGLNPATLSGCIDIIVIRQPNGNLQCSP 56   

                   FhVRFGKlQgVLksseKvVdIeVNGkevDlhMkLgdsGEAFFVeEtedde
                   FhVRFGK+ gVL+s+eKvVdIe+NG++vDlhMkLgd+GEAFFV+Et++d+
    KIAA0188    57 FHVRFGKM-GVLRSREKVVDIEINGESVDLHMKLGDNGEAFFVQETDNDQ 105  

                   edvPdyLltSPipnktta<-*
                   e +P+ L+tSPi +++++   
    KIAA0188   106 EVIPMHLATSPILSEGAS    123  

PF04571.5.ls: domain 1 of 1, from 10 to 123: score 274.6, E = 1.7e-79
                   *->MnyVGrlagrvfksVkelynsiNPATLSGAIDVIVVeQpDGslrCSP
                      MnyVG+lag+vf++Vkely+++NPATLSG+ID+IV++Qp+G+l+CSP
    KIAA0188    10    MNYVGQLAGQVFVTVKELYKGLNPATLSGCIDIIVIRQPNGNLQCSP 56   

                   FhVRFGKlQgVLksseKvVdIeVNGkevDlhMkLgdsGEAFFVeEtedde
                   FhVRFGK+ gVL+s+eKvVdIe+NG++vDlhMkLgd+GEAFFV+Et++d+
    KIAA0188    57 FHVRFGKM-GVLRSREKVVDIEINGESVDLHMKLGDNGEAFFVQETDNDQ 105  

                   edvPdyLltSPipnktta<-*
                   e +P+ L+tSPi +++++   
    KIAA0188   106 EVIPMHLATSPILSEGAS    123  

PF08235.3.fs: domain 1 of 1, from 683 to 839: score 363.2, E = 9.1e-108
                   *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI
                      V+iSDIDGTIT+SD+LGHil+++GkD Wth+G+a+L++k+++nGYk+
    KIAA0188   683    VIISDIDGTITRSDTLGHILPTLGKD-WTHQGIAKLYHKVSQNGYKF 728  

                   iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe
                   +Y++AR+ig+ad+Tr+YL++v+++G+ LP+Gp++LSP++lf+AL+REvIe
    KIAA0188   729 LYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSLFSALHREVIE 778  

                   kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF
                   kkPekFK++cL+dI++lF+pn+ pFyA+FGNr+ Dv+sY++Vgv+ +rIF
    KIAA0188   779 KKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNRIF 828  

                   iinpkgevhqe<-*
                   ++npkge+ qe   
    KIAA0188   829 TVNPKGELVQE    839  

PF08235.3.ls: domain 1 of 1, from 683 to 839: score 365.1, E = 1e-106
                   *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI
                      V+iSDIDGTIT+SD+LGHil+++GkD Wth+G+a+L++k+++nGYk+
    KIAA0188   683    VIISDIDGTITRSDTLGHILPTLGKD-WTHQGIAKLYHKVSQNGYKF 728  

                   iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe
                   +Y++AR+ig+ad+Tr+YL++v+++G+ LP+Gp++LSP++lf+AL+REvIe
    KIAA0188   729 LYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSLFSALHREVIE 778  

                   kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF
                   kkPekFK++cL+dI++lF+pn+ pFyA+FGNr+ Dv+sY++Vgv+ +rIF
    KIAA0188   779 KKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNRIF 828  

                   iinpkgevhqe<-*
                   ++npkge+ qe   
    KIAA0188   829 TVNPKGELVQE    839  

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