hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19430504/chunk_1/iprscan-20080501-19430504.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0185 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00316 621.7 2.5e-182 13 SM00386 69.6 4e-16 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00316 1/13 94 184 .. 1 72 [] 39.5 4.4e-07 SM00316 2/13 198 271 .. 1 72 [] 40.8 1.8e-07 SM00316 3/13 292 359 .. 1 72 [] 40.2 2.7e-07 SM00316 4/13 376 449 .. 1 72 [] 39.8 3.7e-07 SM00316 5/13 464 535 .. 1 72 [] 79.3 4.8e-19 SM00316 6/13 553 624 .. 1 72 [] 79.9 3e-19 SM00316 7/13 647 720 .. 1 72 [] 31.7 9.8e-05 SM00316 8/13 740 811 .. 1 72 [] 79.3 4.6e-19 SM00316 9/13 857 924 .. 1 72 [] 0.5 56 SM00316 10/13 1047 1122 .. 1 72 [] 59.9 3.3e-13 SM00316 11/13 1160 1235 .. 1 72 [] 30.4 0.00024 SM00316 12/13 1241 1311 .. 1 72 [] 53.2 3.4e-11 SM00316 13/13 1335 1409 .. 1 72 [] 47.2 2.2e-09 SM00386 1/7 1613 1644 .. 1 34 [] 0.4 1.1e+03 SM00386 2/7 1646 1683 .. 1 34 [] 9.2 71 SM00386 3/7 1685 1716 .. 1 34 [] 0.4 1.1e+03 SM00386 4/7 1718 1750 .. 1 34 [] 24.5 0.015 SM00386 5/7 1752 1786 .. 1 34 [] 5.3 2.4e+02 SM00386 6/7 1788 1820 .. 1 34 [] 21.0 0.17 SM00386 7/7 1822 1857 .. 1 34 [] 8.8 80 Alignments of top-scoring domains: SM00316: domain 1 of 13, from 94 to 184: score 39.5, E = 4.4e-07 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddr........ +G+++ G V+++++ +++ l+ng+ G++ ++e++d ++++ +++ KIAA0185 94 CEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYtkklneqv 140 ........vkdpeevlkvGdevkvkVlsvdkek...grisLslk<-* +++++ ++ ++ e + +G v+++V s +++++++ Lsl KIAA0185 141 tqeqplkdLLHLPELFSPGMLVRCVVSSLGITDrgkKSVKLSLN 184 SM00316: domain 2 of 13, from 198 to 271: score 40.8, E = 1.8e-07 *->evGdvveGtVtsitpfGafVdlgn.gveGlihiselsddr.vkdpee ++G+ ++GtV s +++G+ Vd+g +g ++++++ + + k++ KIAA0185 198 KPGMLLTGTVSSLEDHGYLVDIGVdGTRAFLPLLKAQEYIrQKNKGA 244 vlkvGdevkvkVlsvdkekgrisLslk<-* +lkvG+ + + V +v g +sLs KIAA0185 245 KLKVGQYLNCIVEKVKGNGGVVSLSVG 271 SM00316: domain 3 of 13, from 292 to 359: score 40.2, E = 2.7e-07 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl +G vv++ V+++tpfG+ +++ ++G++ +l ++ + + KIAA0185 292 LPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPK----KAGTY 334 kvGdevkvkVlsvdkekgrisLslk<-* ++ v++++l v ++++ + Lsl+ KIAA0185 335 FSNQAVRACILCVHPRTRVVHLSLR 359 SM00316: domain 4 of 13, from 376 to 449: score 39.8, E = 3.7e-07 *->evGdvve.GtVtsitp.fGafVdlgngveGlihiselsddrvkdpee + G v+++ V++ ++ Ga +l +gv ++ +s+lsd +++ + e KIAA0185 376 NLGAVLDdVPVQGFFKkAGATFRLKDGVLAYARLSHLSDSKNVFNPE 422 vlkvGdevkvkVlsvdkekgrisLslk<-* +k+G + k++++++ + + Lsl+ KIAA0185 423 AFKPGNTHKCRIIDYSQMDELALLSLR 449 SM00316: domain 5 of 13, from 464 to 535: score 79.3, E = 4.8e-19 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl e+G vv+GtV i+ +G+ V++g+ ++Gl++ +l+d k+pe+++ KIAA0185 464 EPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKY 510 kvGdevkvkVlsvdkekgrisLslk<-* ++Gdevk++Vl +d+e +++ ++lk KIAA0185 511 HIGDEVKCRVLLCDPEAKKLMMTLK 535 SM00316: domain 6 of 13, from 553 to 624: score 79.9, E = 3e-19 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl ++G +G++++++++G++V++ n+v Gl+++ els +++ dpe+v+ KIAA0185 553 KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVF 599 kvGdevkvkVlsvdkekgrisLslk<-* G++vkv+Vl+++++k r+ Ls k KIAA0185 600 YTGQVVKVVVLNCEPSKERMLLSFK 624 SM00316: domain 7 of 13, from 647 to 720: score 31.7, E = 9.8e-05 *->evGdvveGtVtsitpfGafVdlgn.gveGlihiselsddr..vkdpe ++G+ v+ +V + t++G+ V + +++++++++ s+lsd+ ++ + KIAA0185 647 NIGQLVDVKVLEKTKDGLEVAVLPhNIRAFLPTSHLSDHVanGPLLH 693 evlkvGdevkvkVlsvdkekgrisLslk<-* l+ Gd++ ++ + e gr+ L +k KIAA0185 694 HWLQAGDILHRVLCLSQSE-GRVLLCRK 720 SM00316: domain 8 of 13, from 740 to 811: score 79.3, E = 4.6e-19 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl +G+ ++G+V+si+++G+f++++ g++Gl ++ +sd++v ++++ KIAA0185 740 HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHF 786 kvGdevkvkVlsvdkekgrisLslk<-* +G++v +kV++vd+ek r+ Lsl+ KIAA0185 787 VEGQTVAAKVTNVDEEKQRMLLSLR 811 SM00316: domain 9 of 13, from 857 to 924: score 0.5, E = 56 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl +G+ ++ +V+++ ++G +V g+ v l+ + ++ ++ KIAA0185 857 TPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHR----AGQEV 899 kvGdevkvkVlsvdkekgrisLslk<-* + G++ kv++l+vd k + +sl KIAA0185 900 ESGQKKKVVILNVDLLKLEVHVSLH 924 SM00316: domain 10 of 13, from 1047 to 1122: score 59.9, E = 3.3e-13 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddr..vkdpee +Gd v+GtV+si+p ++V l++g+ G ih+s++ dd +++ p KIAA0185 1047 SIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVpeGTSPTT 1093 vlkvGdevkvkVlsvdkek..grisLslk<-* +lkvG++v+++V++ ++ k+ +++ s+ KIAA0185 1094 KLKVGKTVTARVIGGRDMKtfKYLPISHP 1122 SM00316: domain 11 of 13, from 1160 to 1235: score 30.4, E = 0.00024 *->evGdvveGtVtsitp..fGafVdlgngveGlihiselsddr..vkdp + G++v+++ ++ + ++ + V++ + ++G+i++ s ++ k+p KIAA0185 1160 QAGQTVTCFLKKYNVvkKWLEVEIAPDIRGRIPLLLTSLSFkvLKHP 1206 eevlkvGdevkvkVlsvdkekgrisLslk<-* ++++vG+ +++ V++ d +k + Lsl KIAA0185 1207 DKKFRVGQALRATVVGPDSSKTFLCLSLT 1235 SM00316: domain 12 of 13, from 1241 to 1311: score 53.2, E = 3.4e-11 *->evGdvveGtVtsitp.fGafVdlgngveGlihiselsddrvkdpeev e+G+v G+V+++tp+ G+ V ++ g+ G + i ++sd + + p e KIAA0185 1241 EEGEVAMGRVVKVTPnEGLTVSFPFGKIGTVSIFHMSDSYSETPLED 1287 lkvGdevkvkVlsvdkekgrisLslk<-* + + ++v++++ls + + + Lsl+ KIAA0185 1288 FVPQKVVRCYILSTAD--NVLTLSLR 1311 SM00316: domain 13 of 13, from 1335 to 1409: score 47.2, E = 2.2e-09 *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddr...vkdpe ++G+ + G V si p+G+f +lg+ v Gl s++s + +++ + KIAA0185 1335 KEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSpskKALYN 1381 evlkvGdevkvkVlsvdkekgrisLslk<-* ++l +G+ ++++Vl+ + +k+ ++Ls KIAA0185 1382 KHLPEGKLLTARVLRLNHQKNLVELSFL 1409 SM00386: domain 1 of 7, from 1613 to 1644: score 0.4, E = 1.1e+03 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* + +e a + ++r++ + p +s lWl+Y +f KIAA0185 1613 RQPESADD-FDRLVLSSP-NSSILWLQYMAFHLQ 1644 SM00386: domain 2 of 7, from 1646 to 1683: score 9.2, E = 71 *->gdieraRkiyeralekfp....dksvdlWlkYaefEer<-* +ie+aR++ eral+++ +++ ++W + + +E KIAA0185 1646 TEIEKARAVAERALKTISfreeQEKLNVWVALLNLENM 1683 SM00386: domain 3 of 7, from 1685 to 1716: score 0.4, E = 1.1e+03 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* g e k++era+ + +++l a+ + KIAA0185 1685 GSQESLTKVFERAVQYN--EPLKVFLHLADIYAK 1716 SM00386: domain 4 of 7, from 1718 to 1750: score 24.5, E = 0.015 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* +++++a ++y+r+l++f + + +W+kY +f+ r KIAA0185 1718 EKFQEAGELYNRMLKRFR-QEKAVWIKYGAFLLR 1750 SM00386: domain 5 of 7, from 1752 to 1786: score 5.3, E = 2.4e+02 *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-* ++++rale p+ +vd+ k+a++E KIAA0185 1752 SQAAASHRVLQRALECLPsKEHVDVIAKFAQLEFQ 1786 SM00386: domain 6 of 7, from 1788 to 1820: score 21.0, E = 0.17 *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-* gd era +i+e l ++p k d+W Y+++ ++ KIAA0185 1788 GDAERAKAIFENTLSTYP-KRTDVWSVYIDMTIK 1820 SM00386: domain 7 of 7, from 1822 to 1857: score 8.8, E = 80 *->gdieraRkiyeralekfp..dksvdlWlkYaefEer<-* g +R+i+er + + + ++++Y+++E+ KIAA0185 1822 GSQKDVRDIFERVIHLSLapKRMKFFFKRYLDYEKQ 1857 //