hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19430504/chunk_1/iprscan-20080501-19430504.nocrc
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Query sequence: KIAA0185
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00575.13.fs S1 RNA binding domain                          206.3    6.8e-59   8
PF00575.13.ls S1 RNA binding domain                          182.0    1.4e-51   6
PF07719.7.ls Tetratricopeptide repeat                        26.9    6.7e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00575.13.fs   3/8     462   535 ..     1    79 []    42.8  2.1e-10
PF00575.13.ls   2/6     462   535 ..     1    79 []    44.7  2.9e-10
PF00575.13.ls   3/6     551   624 ..     1    79 []    46.0  1.2e-10
PF00575.13.fs   4/8     560   624 ..    10    79 .]    48.7  5.6e-12
PF00575.13.fs   6/8     738   811 ..     1    79 []    44.0  9.7e-11
PF00575.13.ls   4/6     738   811 ..     1    79 []    46.0  1.2e-10
PF00575.13.ls   5/6    1045  1122 ..     1    79 []    25.9  0.00013
PF00575.13.fs   7/8    1045  1107 ..     1    66 [.    32.4  1.1e-07

Alignments of top-scoring domains:
PF00575.13.fs: domain 3 of 8, from 462 to 535: score 42.8, E = 2.1e-10
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfv.piSeisrdkeyr
                      + e+G+vv+GtV  + + +G++V +g + ++G+v+p +  ++ +   
    KIAA0185   462    DIEPGAVVKGTVLTIKS-YGMLVKVG-EQMRGLVpPMHLADILM--- 503  

                   vedpsevlkvGdevkvkvlkvDkergriiLSik<-*
                    ++p++++ +Gdevk  vl +D+e +++ +++k   
    KIAA0185   504 -KNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK    535  

PF00575.13.ls: domain 2 of 6, from 462 to 535: score 44.7, E = 2.9e-10
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfv.piSeisrdkeyr
                      + e+G+vv+GtV  + + +G++V +g + ++G+v+p +  ++ +   
    KIAA0185   462    DIEPGAVVKGTVLTIKS-YGMLVKVG-EQMRGLVpPMHLADILM--- 503  

                   vedpsevlkvGdevkvkvlkvDkergriiLSik<-*
                    ++p++++ +Gdevk  vl +D+e +++ +++k   
    KIAA0185   504 -KNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK    535  

PF00575.13.ls: domain 3 of 6, from 551 to 624: score 46.0, E = 1.2e-10
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv
                      + ++G    G + rv + +G +V    n+v G+vp +e+s +   ++
    KIAA0185   551    DAKPGLQTHGFIIRVKD-YGCIVKFY-NNVQGLVPKHELSTE---YI 592  

                   edpsevlkvGdevkvkvlkvDkergriiLSik<-*
                   +dp++v++ G+ vkv+vl++++ ++r+ LS k   
    KIAA0185   593 PDPERVFYTGQVVKVVVLNCEPSKERMLLSFK    624  

PF00575.13.fs: domain 4 of 8, from 560 to 624: score 48.7, E = 5.6e-12
                   *->GtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrvedpsevlkv
                      G + rv + +G +V    n+v G+vp +e+s +   +++dp++v++ 
    KIAA0185   560    GFIIRVKD-YGCIVKFY-NNVQGLVPKHELSTE---YIPDPERVFYT 601  

                   GdevkvkvlkvDkergriiLSik<-*
                   G+ vkv+vl++++ ++r+ LS k   
    KIAA0185   602 GQVVKVVVLNCEPSKERMLLSFK    624  

PF00575.13.fs: domain 6 of 8, from 738 to 811: score 44.0, E = 9.7e-11
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv
                      +  +G+ + G V+++ + +G+f++    g +G+ p   +s++    v
    KIAA0185   738    EIHPGMLLIGFVKSIKD-YGVFIQFP-SGLSGLAPKAIMSDK---FV 779  

                   edpsevlkvGdevkvkvlkvDkergriiLSik<-*
                    + s+ +  G++v +kv++vD+e+ r+ LS++   
    KIAA0185   780 TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR    811  

PF00575.13.ls: domain 4 of 6, from 738 to 811: score 46.0, E = 1.2e-10
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv
                      +  +G+ + G V+++ + +G+f++    g +G+ p   +s++    v
    KIAA0185   738    EIHPGMLLIGFVKSIKD-YGVFIQFP-SGLSGLAPKAIMSDK---FV 779  

                   edpsevlkvGdevkvkvlkvDkergriiLSik<-*
                    + s+ +  G++v +kv++vD+e+ r+ LS++   
    KIAA0185   780 TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR    811  

PF00575.13.ls: domain 5 of 6, from 1045 to 1122: score 25.9, E = 0.00013
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv
                       l +Gd v+GtV+++ +   + V l+  g+ G +++S+i +d  + +
    KIAA0185  1045    TLSIGDMVTGTVKSIKP-THVVVTLE-DGIIGCIHASHILDDV-PEG 1088 

                   edpsevlkvGdevkvkvlkvD..kergriiLSik<-*
                    +p+++lkvG++v + v++ ++ k+ +++  S+    
    KIAA0185  1089 TSPTTKLKVGKTVTARVIGGRdmKTFKYLPISHP    1122 

PF00575.13.fs: domain 7 of 8, from 1045 to 1107: score 32.4, E = 1.1e-07
                   *->kleeGdvveGtVtrvtklfGafVdlgengveGfvpiSeisrdkeyrv
                       l +Gd v+GtV+++ +   + V l+  g+ G +++S+i +d  + +
    KIAA0185  1045    TLSIGDMVTGTVKSIKP-THVVVTLE-DGIIGCIHASHILDDV-PEG 1088 

                   edpsevlkvGdevkvkvlk<-*
                    +p+++lkvG++v + v++   
    KIAA0185  1089 TSPTTKLKVGKTVTARVIG    1107 

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