hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19232303/chunk_1/iprscan-20080501-19232303.nocrc
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Query sequence: KIAA0173
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03133.5.ls Tubulin-tyrosine ligase family                 522.7   3.8e-154   1
PF03133.5.fs Tubulin-tyrosine ligase family                 520.8   1.4e-153   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03133.5.fs   1/1     655   950 ..     1   330 []   520.8 1.4e-153
PF03133.5.ls   1/1     655   950 ..     1   330 []   522.7 3.8e-154

Alignments of top-scoring domains:
PF03133.5.fs: domain 1 of 1, from 655 to 950: score 520.8, E = 1.4e-153
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++++e     hq++NhFPgs++i+rKD+lw+n++r+q++fg+k  ef
    KIAA0173   655    RSIRE-----HQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKK--EF 694  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    f+p++filp+d++ +++++e ++r    ++WIvKP+asaRG+GI +++k
    KIAA0173   695 SFFPQSFILPQDAKLLRKAWESSSR----QKWIVKPPASARGIGIQVIHK 740  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   +sq+p               +rrpl+VQ+Y+++P+Li+g     +KFDlR
    KIAA0173   741 WSQLP---------------KRRPLLVQRYLHKPYLISG-----SKFDLR 770  

                   lYVLvtsvdPLriYvYregllRFAsvkYsp.lsdlddvemHLTNysiqkk
                   +YV+vts+dPLriY++++gl+RFAs+kYsp++++l +++mHLTNys++kk
    KIAA0173   771 IYVYVTSYDPLRIYLFSDGLVRFASCKYSPsMKSLGNKFMHLTNYSVNKK 820  

                   ssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiikti
                   + +Y+  n d+++++ghkw l++lw+yl ++g++ ++iw++i ++++kti
    KIAA0173   821 NAEYQ-ANADEMACQGHKWALKALWNYLSQKGVNSDAIWEKIKDVVVKTI 869  

                   laae..iveasrlnvaplyncFELyGfDimlkwdDDenlkPwLLEVNasP
                   +++e+ + +   ++v+++y+c+EL+GfDiml    DenlkPw LEVN+sP
    KIAA0173   870 ISSEpyVTSLLKMYVRRPYSCHELFGFDIML----DENLKPWVLEVNISP 915  

                   slhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   slhs+++ld ++k ++ird+Ln ++ +v+p+ e +i   
    KIAA0173   916 SLHSSSPLDISIKGQMIRDLLN-LAGFVLPNAEDII    950  

PF03133.5.ls: domain 1 of 1, from 655 to 950: score 522.7, E = 3.8e-154
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++++e     hq++NhFPgs++i+rKD+lw+n++r+q++fg+k  ef
    KIAA0173   655    RSIRE-----HQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKK--EF 694  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    f+p++filp+d++ +++++e ++r    ++WIvKP+asaRG+GI +++k
    KIAA0173   695 SFFPQSFILPQDAKLLRKAWESSSR----QKWIVKPPASARGIGIQVIHK 740  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   +sq+p               +rrpl+VQ+Y+++P+Li+g     +KFDlR
    KIAA0173   741 WSQLP---------------KRRPLLVQRYLHKPYLISG-----SKFDLR 770  

                   lYVLvtsvdPLriYvYregllRFAsvkYsp.lsdlddvemHLTNysiqkk
                   +YV+vts+dPLriY++++gl+RFAs+kYsp++++l +++mHLTNys++kk
    KIAA0173   771 IYVYVTSYDPLRIYLFSDGLVRFASCKYSPsMKSLGNKFMHLTNYSVNKK 820  

                   ssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiikti
                   + +Y+  n d+++++ghkw l++lw+yl ++g++ ++iw++i ++++kti
    KIAA0173   821 NAEYQ-ANADEMACQGHKWALKALWNYLSQKGVNSDAIWEKIKDVVVKTI 869  

                   laae..iveasrlnvaplyncFELyGfDimlkwdDDenlkPwLLEVNasP
                   +++e+ + +   ++v+++y+c+EL+GfDiml    DenlkPw LEVN+sP
    KIAA0173   870 ISSEpyVTSLLKMYVRRPYSCHELFGFDIML----DENLKPWVLEVNISP 915  

                   slhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   slhs+++ld ++k ++ird+Ln ++ +v+p+ e +i   
    KIAA0173   916 SLHSSSPLDISIKGQMIRDLLN-LAGFVLPNAEDII    950  

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