# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02346.fasta.huge -Q ../query/KIAA0173.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0173, 1203 aa
 vs ./tmplib.23147 library

1986302 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.2878+/-0.00644; mu= 13.8100+/- 0.437
 mean_var=186.6466+/-45.499, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.093878

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0998  ( 1226 res)   hk08691                    (1226) 1043 154.7 8.3e-38


>>KIAA0998  ( 1226 res)   hk08691                         (1226 aa)
 initn: 406 init1: 406 opt: 1043  Z-score: 770.6  bits: 154.7 E(): 8.3e-38
Smith-Waterman score: 1043;  37.961% identity (69.197% similar) in 461 aa overlap (607-1058:6-460)

        580       590       600       610       620       630      
KIAA01 PALIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHF-KIS
                                     .:  : .:.  .   .:.. .    : .. 
KIAA09                          IRVIGERYHLSYKIVRTDSRLVRSILTAHGFHEVH
                                        10        20        30     

         640        650       660       670       680       690    
KIAA01 KRNDDWLGCW-GHHMKSPSFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEF
         . :.   : : :.:   .:.. : ::.:::: :... :::::..:. :::   : : :
KIAA09 PSSTDYNLMWTGSHLKPFLLRTLSEAQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFKVF
          40        50        60        70        80        90     

          700       710       720       730       740       750    
KIAA01 SFFPQSFILPQDAKLLRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPKRRPLLVQR
        ..::.:.:: .   . ... :..:  ::::: ::.:: :. .:.. .:.  .. .::.:
KIAA09 HILPQTFLLPAEYAEFCNSY-SKDRGPWIVKPVASSRGRGVYLINNPNQISLEENILVSR
         100       110        120       130       140       150    

          760       770       780       790       800       810    
KIAA01 YLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTN
       :...: ::.  :::.:.:: ::::::: :::. .::.:::. .:. . :.. :.::::::
KIAA09 YINNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGAKNIRNQFMHLTN
          160       170       180       190       200       210    

          820        830       840       850       860       870   
KIAA01 YSVNKKNAEYQANAD-EMACQGHKWALKALWNYLSQKGVNSDAIWEKIKDVVVKTIISSE
       ::::::...: .  : :.   :.::...:.  ::.:.: .. :.  ...:...:::::.:
KIAA09 YSVNKKSGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGRDTTALMAHVEDLIIKTIISAE
          220       230       240       250       260       270    

           880       890       900       910       920       930   
KIAA01 PYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSSSPLDISIKGQMIR
         ...  : .: .  :: ::.:::...: .::::.::::.::::  ..:::..::..:: 
KIAA09 LAIATACKTFVPHRSSCFELYGFDVLIDSTLKPWLLEVNLSPSLACDAPLDLKIKASMIS
          280       290       300       310       320       330    

           940       950           960       970       980         
KIAA01 DLLNLAGFVLPNAEDIISS----PSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAYYL
       :.....:::  .  .  :.    :.  ::  .  : .  ..::  :  ..  .::.    
KIAA09 DMFTVVGFVCQDPAQRASTRPIYPTFESSRRN--PFQKPQRCR--PLSASDAEMKNLVGS
          340       350       360         370         380       390

     990      1000      1010      1020      1030       1040        
KIAA01 TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPSHISSR-YLRFFEQPRY
       ...     . .:::  :. .....: ....: .::: : ::::.  . . :  ..:.   
KIAA09 AREKGPGKLGGSVLG-LSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEIYGSYLEHKTS
              400        410       420       430       440         

     1050       1060      1070      1080      1090      1100       
KIAA01 FN-ILTTQWEQKYHGNKLKGVDLLRSWCYKGFHMGVVSDSAPVWSLPTSLLTISKDDVIL
       .: .:.:.  :                                                 
KIAA09 MNYMLATRLFQDRMTADGAPELKIESLNSKAKLHAALYERKLLSLEVRKRRRRSSRLRAM
     450       460       470       480       490       500         




1203 residues in 1 query   sequences
1986302 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:20 2008 done: Thu Dec 18 15:10:20 2008
 Total Scan time:  0.740 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]