hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19065112/chunk_1/iprscan-20080501-19065112.nocrc
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Query sequence: KIAA0163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00034                                                  65.9      5e-15   1
SM00192                                                  54.1    1.9e-11   1
SM00214                                                  47.3      2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00192    1/1      29    68 ..     1    47 []    54.1  1.9e-11
SM00034    1/1     115   266 ..     1   141 []    65.9    5e-15
SM00214    1/1     271   332 ..     1    75 []    47.3    2e-09

Alignments of top-scoring domains:
SM00192: domain 1 of 1, from 29 to 68: score 54.1, E = 1.9e-11
                   *->tCspgepneFqCgngr..CIplswvCDGddDCgDGSDEdpaidpenC
                      +C+pg   +F+C++g+ +CIpl w+CDG   C+D SDE      +nC
    KIAA0163    29    RCNPG---QFACRSGTiqCIPLPWQCDGWATCEDESDE------ANC 66   

                   ps<-*
                   p+   
    KIAA0163    67 PE    68   

SM00034: domain 1 of 1, from 115 to 266: score 65.9, E = 5e-15
                   *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
                      C   p+gW++y++     + +CY+++ +++++ dA ++Cq+l+    
    KIAA0163   115    C---PTGWHHYEG-----TASCYRVYLsgenYWDAAQTCQRLN---- 149  

                   rvkgghLasIhseeEndFltsl................yWIGLs......
                       g+La++ + +E++F++ ++ ++++++ + +++++ W+G +   +++
    KIAA0163   150 ----GSLATFSTDQELRFVLAQewdqpersfgwkdqrkLWVGYQyvitgr 195  

                   .....g.wq.WsDGsgviplaltpvsytnWapgePnnePnnkfrhgnggn
                   +++ +g+w+    Gs+        v +   +p + +        ++ ++n
    KIAA0163   196 nrsleGrWEvAFKGSS-------EV-FLPPDPIFASA-------MSENDN 230  

                   gdCvvls..............WndvsCtskdpadklpfiCk<-*
                     C+ l   + ++ ++++ ++W+ +sC++     k +f+Ck   
    KIAA0163   231 VFCAQLQcfhfptlrhhdlhsWHAESCYE-----KSSFLCK    266  

SM00214: domain 1 of 1, from 271 to 332: score 47.3, E = 2e-09
                   *->CvhpnGevyrdgetWkpdk...pCqiCtCldgekvlCdkveCpppps
                      Cv+   + + d  ++ + k+++pC  CtC++ge  +C +  C+ p+ 
    KIAA0163   271    CVD-IKDNVVDEGFYFTPKgddPCLSCTCHGGEPEMCVAALCERPQ- 315  

                   lpckdsdCpnperlpavaekppGeCCpeyrC<-*
                         +C+++       +k+p+eCC++ +C   
    KIAA0163   316 ------GCQQY-------RKDPKECCKF-MC    332  

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