hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19065112/chunk_1/iprscan-20080501-19065112.nocrc
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Query sequence: KIAA0163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00057.9.fs Low-density lipoprotein receptor domain     50.0    1.7e-15   1
PF00057.9.ls Low-density lipoprotein receptor domain     51.9    1.9e-12   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00057.9.fs   1/1      28    66 ..     1    40 []    50.0  1.7e-15
PF00057.9.ls   1/1      28    66 ..     1    40 []    51.9  1.9e-12

Alignments of top-scoring domains:
PF00057.9.fs: domain 1 of 1, from 28 to 66: score 50.0, E = 1.7e-15
                   *->stCgpdeFqCgsgr.rCIprswvCDGdpDCeDgSDEslenC<-*
                       +C p++F C+sg  +CIp  w+CDG + CeD SDE  +nC   
    KIAA0163    28    LRCNPGQFACRSGTiQCIPLPWQCDGWATCEDESDE--ANC    66   

PF00057.9.ls: domain 1 of 1, from 28 to 66: score 51.9, E = 1.9e-12
                   *->stCgpdeFqCgsgr.rCIprswvCDGdpDCeDgSDEslenC<-*
                       +C p++F C+sg  +CIp  w+CDG + CeD SDE  +nC   
    KIAA0163    28    LRCNPGQFACRSGTiQCIPLPWQCDGWATCEDESDE--ANC    66   

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