hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18551026/chunk_1/iprscan-20080501-18551026.nocrc
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Query sequence: KIAA0156
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD,   139.2    1.1e-38   2
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD,   135.3    1.6e-37   2
PF05391.2.fs Lsm interaction motif                       37.4    8.1e-10   1
PF05391.2.ls Lsm interaction motif                       39.3    1.2e-08   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00076.12.ls   1/2     706   777 ..     1    74 []    62.3  1.5e-15
PF00076.12.fs   1/2     706   777 ..     1    74 []    60.3  3.7e-16
PF00076.12.fs   2/2     803   873 ..     1    74 []    75.0  2.9e-20
PF00076.12.ls   2/2     803   873 ..     1    74 []    76.9  5.9e-20
PF05391.2.fs   1/1     942   963 .]     1    22 []    37.4  8.1e-10
PF05391.2.ls   1/1     942   963 .]     1    22 []    39.3  1.2e-08

Alignments of top-scoring domains:
PF00076.12.ls: domain 1 of 2, from 706 to 777: score 62.3, E = 1.5e-15
                   *->lfVgNLppdtte..edLkdlFskfGpiesikivrDttretgrskGfa
                      +fV+NLp+++ e++ +L+ lF+ +G+++ i+ +    ++ g  +G++
    KIAA0156   706    VFVSNLPYSMQEpdTKLRPLFEACGEVVQIRPIF---SNRGDFRGYC 749  

                   FVeFedeedAekAldalnGkelggrelrv<-*
                   +VeF+ e +A  Al+ ++ k ++gr++ v   
    KIAA0156   750 YVEFKEEKSALQALE-MDRKSVEGRPMFV    777  

PF00076.12.fs: domain 1 of 2, from 706 to 777: score 60.3, E = 3.7e-16
                   *->lfVgNLppdtte..edLkdlFskfGpiesikivrDttretgrskGfa
                      +fV+NLp+++ e++ +L+ lF+ +G+++ i+ +    ++ g  +G++
    KIAA0156   706    VFVSNLPYSMQEpdTKLRPLFEACGEVVQIRPIF---SNRGDFRGYC 749  

                   FVeFedeedAekAldalnGkelggrelrv<-*
                   +VeF+ e +A  Al+ ++ k ++gr++ v   
    KIAA0156   750 YVEFKEEKSALQALE-MDRKSVEGRPMFV    777  

PF00076.12.fs: domain 2 of 2, from 803 to 873: score 75.0, E = 2.9e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+++Lp+++t+e+L+++ + +G +++ ++v++     g++kG a+V
    KIAA0156   803    LFISGLPFSCTKEELEEICKAHGTVKDLRLVTN---RAGKPKGLAYV 846  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+e+e++A  A+ +++G++++ + ++v   
    KIAA0156   847 EYENESQASQAVMKMDGMTIKENIIKV    873  

PF00076.12.ls: domain 2 of 2, from 803 to 873: score 76.9, E = 5.9e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+++Lp+++t+e+L+++ + +G +++ ++v++     g++kG a+V
    KIAA0156   803    LFISGLPFSCTKEELEEICKAHGTVKDLRLVTN---RAGKPKGLAYV 846  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+e+e++A  A+ +++G++++ + ++v   
    KIAA0156   847 EYENESQASQAVMKMDGMTIKENIIKV    873  

PF05391.2.fs: domain 1 of 1, from 942 to 963: score 37.4, E = 8.1e-10
                   *->skesdtappkSNDDFRKlFLkk<-*
                      ++++++ap++SN+DF+KlFL+k   
    KIAA0156   942    APAATEAPKMSNADFAKLFLRK    963  

PF05391.2.ls: domain 1 of 1, from 942 to 963: score 39.3, E = 1.2e-08
                   *->skesdtappkSNDDFRKlFLkk<-*
                      ++++++ap++SN+DF+KlFL+k   
    KIAA0156   942    APAATEAPKMSNADFAKLFLRK    963  

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