hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18514870/chunk_1/iprscan-20080501-18514870.nocrc
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Query sequence: KIAA0154
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00809                                                 166.3    3.1e-45   1
SM00288                                                 143.2    2.7e-38   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00288           1/1      11   145 ..     1   145 []   143.2  2.7e-38
SM00809           1/1     560   684 ..     1   124 []   166.3  3.1e-45

Alignments of top-scoring domains:
SM00288: domain 1 of 1, from 11 to 145: score 143.2, E = 2.7e-38
                   *->verliekATsesllaeeDWelileICDlinstqedgPkdAvralkKR
                      +e++++kAT++s+++ eDWe+i+ +CD+in++  +gP+ Avr+l+++
    KIAA0154    11    LESWLNKATNPSNRQ-EDWEYIIGFCDQINKE-LEGPQIAVRLLAHK 55   

                   lnsnknphVallALtLLdtcVkNCGskFhlevaskeFlnreLvkliksky
                   ++s +++++al+ALt+L+  V+   ++ + e  + +++ +  ++ ik+ y
    KIAA0154    56 IQS-PQEWEALQALTYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAY 104  

                   hlkldkDaVkekileliqeWadafCrtgkndpdlslvvdvydlLkkkg<-
                   h       + +++  ++ ++   ++rt+ ++p+ + ++ v+d+ +k++  
    KIAA0154   105 H-------MLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFDDEEKSK   145  

                   *
                    
    KIAA0154     -   -    

SM00809: domain 1 of 1, from 560 to 684: score 166.3, E = 3.1e-45
                   *->pklssappivayeknglqIgfkfek.rrpgepdviritltftNksss
                       k+ssa p++ay+kng++I f+f k+++pg+pdv+++++ + N+++ 
    KIAA0154   560    IKPSSALPVTAYDKNGFRILFHFAKeCPPGRPDVLVVVVSMLNTAPL 606  

                   pitnFsfqaAVPKsqkLqLqppssntlppggqggpPA.itQvlkvenpgk
                   p+ ++++qaAVPKs+k++Lqpps+++l p+++++pPA itQv++++np+k
    KIAA0154   607 PVKSIVLQAAVPKSMKVKLQPPSGTELSPFSPIQPPAaITQVMLLANPLK 656  

                   gkplrlrlrlsYtvggqsvqeqgdvlkfP<-*
                    +++rlr++l++ +g q ++e+g+v++fP   
    KIAA0154   657 -EKVRLRYKLTFALGEQLSTEVGEVDQFP    684  

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