hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18514870/chunk_1/iprscan-20080501-18514870.nocrc
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Query sequence: KIAA0154
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF02883.10.fs   Adaptin C-terminal domain               181.3    1.5e-54   1
PF03127.5.ls    GAT domain                              188.5    1.5e-53   1
PF03127.5.fs    GAT domain                              186.5    4.7e-53   1
PF02883.10.ls   Adaptin C-terminal domain               183.3    5.4e-52   1
PF00790.9.fs    VHS domain                              150.1    5.3e-42   2
PF00790.9.ls    VHS domain                              122.1    1.4e-33   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00790.9.ls      1/1       5   111 ..     1   153 []   122.1  1.4e-33
PF00790.9.fs      1/2       5    69 ..     1    71 [.   100.6  2.9e-27
PF00790.9.fs      2/2      70   111 ..   105   153 .]    49.5  3.5e-13
PF03127.5.fs      1/1     175   276 ..     1   106 []   186.5  4.7e-53
PF03127.5.ls      1/1     175   276 ..     1   106 []   188.5  1.5e-53
PF02883.10.ls     1/1     560   684 ..     1   125 []   183.3  5.4e-52
PF02883.10.fs     1/1     560   684 ..     1   125 []   181.3  1.5e-54

Alignments of top-scoring domains:
PF00790.9.ls: domain 1 of 1, from 5 to 111: score 122.1, E = 1.4e-33
                   *->ssfasplerliekATdeslreedlDwslildicDlInekiYqetgPk
                      ++++++le++++kAT++s+r+e  Dw++i+ +cD+In++    +gP+
    KIAA0154     5    EAEGESLESWLNKATNPSNRQE--DWEYIIGFCDQINKE---LEGPQ 46   

                   eAvrlIkKrinstknphvallALtlLdaCVKNCGskFHleiaskeFlneL
                    Avrl++++i+s +++++al+ALt                          
    KIAA0154    47 IAVRLLAHKIQS-PQEWEALQALT-------------------------- 69   

                   vkliprkppgrpakdkVkkkileliqeWadafCKhdknkpdlkyisdvyk
                          ++g+++++kVk+k++el+++W++a+       p+  +i+d+y+
    KIAA0154    70 -------YLGDRVSEKVKTKVIELLYSWTMAL-------PEEAKIKDAYH 105  

                   lLKrkG<-*
                   +LKr+G   
    KIAA0154   106 MLKRQG    111  

PF00790.9.fs: domain 1 of 2, from 5 to 69: score 100.6, E = 2.9e-27
                   *->ssfasplerliekATdeslreedlDwslildicDlInekiYqetgPk
                      ++++++le++++kAT++s+r+e  Dw++i+ +cD+In++    +gP+
    KIAA0154     5    EAEGESLESWLNKATNPSNRQE--DWEYIIGFCDQINKE---LEGPQ 46   

                   eAvrlIkKrinstknphvallALt<-*
                    Avrl++++i+s +++++al+ALt   
    KIAA0154    47 IAVRLLAHKIQS-PQEWEALQALT    69   

PF00790.9.fs: domain 2 of 2, from 70 to 111: score 49.5, E = 3.5e-13
                   *->ppgrpakdkVkkkileliqeWadafCKhdknkpdlkyisdvyklLKr
                      ++g+++++kVk+k++el+++W++a+       p+  +i+d+y++LKr
    KIAA0154    70    YLGDRVSEKVKTKVIELLYSWTMAL-------PEEAKIKDAYHMLKR 109  

                   kG<-*
                   +G   
    KIAA0154   110 QG    111  

PF03127.5.fs: domain 1 of 1, from 175 to 276: score 186.5, E = 4.7e-53
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +r++k++K+l++lEeV+nnVrlLseML +y+++d++++d+El++eL+
    KIAA0154   175    ARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELF 221  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   ++C+++++++f+L+s+teDnD   ++l++iLqa+DnL++vi++Yk+i++g
    KIAA0154   222 DQCENKRRTLFKLASETEDND---NSLGDILQASDNLSRVINSYKTIIEG 268  

                   rtrvlgaaa<-*
                   ++ ++g++a   
    KIAA0154   269 QV-INGEVA    276  

PF03127.5.ls: domain 1 of 1, from 175 to 276: score 188.5, E = 1.5e-53
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +r++k++K+l++lEeV+nnVrlLseML +y+++d++++d+El++eL+
    KIAA0154   175    ARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELF 221  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   ++C+++++++f+L+s+teDnD   ++l++iLqa+DnL++vi++Yk+i++g
    KIAA0154   222 DQCENKRRTLFKLASETEDND---NSLGDILQASDNLSRVINSYKTIIEG 268  

                   rtrvlgaaa<-*
                   ++ ++g++a   
    KIAA0154   269 QV-INGEVA    276  

PF02883.10.ls: domain 1 of 1, from 560 to 684: score 183.3, E = 5.4e-52
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp+++ ++++y+++g++I ++f ++++p++p+++++++ + N+++ 
    KIAA0154   560    IKPSSALPVTAYDKNGFRILFHFAKECpPGRPDVLVVVVSMLNTAPL 606  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+  +v+qaAVPKs+k++Lqp+sg++l++++p+++P aitQv+ + np+ 
    KIAA0154   607 PVKSIVLQAAVPKSMKVKLQPPSGTELSPFSPIQPPaAITQVMLLANPL- 655  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+++rlr+klt+ lg q   e+gev+++P   
    KIAA0154   656 -KEKVRLRYKLTFALGEQLSTEVGEVDQFP    684  

PF02883.10.fs: domain 1 of 1, from 560 to 684: score 181.3, E = 1.5e-54
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp+++ ++++y+++g++I ++f ++++p++p+++++++ + N+++ 
    KIAA0154   560    IKPSSALPVTAYDKNGFRILFHFAKECpPGRPDVLVVVVSMLNTAPL 606  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+  +v+qaAVPKs+k++Lqp+sg++l++++p+++P aitQv+ + np+ 
    KIAA0154   607 PVKSIVLQAAVPKSMKVKLQPPSGTELSPFSPIQPPaAITQVMLLANPL- 655  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+++rlr+klt+ lg q   e+gev+++P   
    KIAA0154   656 -KEKVRLRYKLTFALGEQLSTEVGEVDQFP    684  

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